Browse Element(s) Details


Os.11900.1.S1_at

Description gb:AK105384.1
DB_XREF= gi:32990593
TID=Os.11900.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C12, full insert sequence.
FL= gb:AK121468.1 gb:AK105384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3793011/11Hypoxia induced protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37960Os.54977.1.S1_at11/112+22935412..22937076expressed protein
LOC_Os02g37960Os.54977.1.S2_at11/112+22935412..22937076expressed protein
LOC_Os02g37970Os.55236.1.S1_at11/112+22936995..22937952senescence-associated protein, putative, expressed
LOC_Os02g37980OsAffx.2903.1.S1_at9/112+22944428..22948969expressed protein
LOC_Os02g37980OsAffx.1396.1.S1_x_at1/112+22944428..22948969expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11900.1.S1_at--714--9011Chr02:22924073..22924093 (21 bp)
TGCAAGGTTGCATGCTCAAGCCCTA
LOC_Os02g37930
Os.11900.1.S1_at--1149--9671Chr02:22924084..22924108 (25 bp)
TCAAGCCCTAACACTAGCAGCGTTA
LOC_Os02g37930
Os.11900.1.S1_at--926--8931Chr02:22924135..22924159 (25 bp)
TGACGCGAAGTACGGCACATCTGGA
LOC_Os02g37930
Os.11900.1.S1_at--618--3091Chr02:22924185..22924209 (25 bp)
AATACCTGGCGCATTCACATAAAGA
LOC_Os02g37930
Os.11900.1.S1_at--545--2811Chr02:22924212..22924236 (25 bp)
AAGATCTTCATATTCGCTGTTGGAT
LOC_Os02g37930
Os.11900.1.S1_at--987--10671Chr02:22924265..22924289 (25 bp)
TTCCTATGAGCTCCCCATGATGATT
LOC_Os02g37930
Os.11900.1.S1_at--245--6591Chr02:22924381..22924405 (25 bp)
GATTGCGATATGTAACCTCACTTGC
LOC_Os02g37930
Os.11900.1.S1_at--1108--7051Chr02:22924392..22924416 (25 bp)
GTAACCTCACTTGCTGACAATCTTA
LOC_Os02g37930
Os.11900.1.S1_at--2--5531Chr02:22924437..22924461 (25 bp)
GAAAAGTGTTCCTGTCTTGCATTGA
LOC_Os02g37930
Os.11900.1.S1_at--132--8611Chr02:22924505..22924529 (25 bp)
TGGTCCACGGATTTTGTTCTTACTG
LOC_Os02g37930
Os.11900.1.S1_at--716--3351Chr02:22924552..22924576 (25 bp)
CACCCGTATTCGCATTTTCAAACAT
LOC_Os02g37930
Target Sequence 
TGCAAGGTTGCATGCTCAAGCCCTAACACTAGCAGCGTTAGTGGGATCTGCAATGGTAGAGTACTATGACGCGAAGTACG
GCACATCTGGACCGAAGNNGGACAAGTACACAAGCCAATACCTGGCGCATTCACATAAAGATTAAGATCTTCATATTCGC
TGTTGGATGGCGGGTTATTTTAGGTTCATTTTGGGGTTCCTATGAGCTCCCCATGATGATTATTTTGTCTCCTTAACTAC
AAATGAAACTTGCCAGGGCATTCCTGAGCAACGAGGGTGTAATACAGGGTTGATCTGCATAGATCAATTTCAGATTGCGA
TATGTAACCTCACTTGCTGACAATCTTATTTTATTATTTTTCAACGAGGAAAAGTGTTCCTGTCTTGCATTGAATCTGTC
TTAGTTTTCTGCAGTTGAATCTGCCGTAAGATAGAATGGTCCACGGATTTTGTTCTTACTGTTTGTAATGCAGGAGCATT
CCCCACCCGTATTCGCATTTTCAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis