Browse Element(s) Details


Os.18483.1.S1_at

Description gb:AK069742.1
DB_XREF= gi:32979766
TID=Os.18483.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full insert sequence.
FL= gb:AK069742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3791011/11phosphodiesterase/alkaline phosphatase D, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37870Os.23169.1.S1_at11/112+22879235..22882257Brix domain containing protein 2, putative, expressed
LOC_Os02g37880Os.15913.1.S1_a_at11/112+22886643..22891558Protein kinase domain containing protein, expressed
LOC_Os02g37890Os.45796.1.S1_at11/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.2.S1_x_at7/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890OsAffx.3900.1.S1_at5/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37890Os.40855.4.S1_x_at4/112+22894844..22900596oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os02g37900Os.40360.1.S1_x_at1/112+22901770..22902489hypothetical protein
LOC_Os02g37910Os.18483.1.S1_at11/112+22905097..22909797phosphodiesterase/alkaline phosphatase D, putative, expressed
LOC_Os02g37920Os.23276.1.S1_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37920Os.23276.1.S2_at11/112+22911966..22918595DNA mismatch repair protein, putative, expressed
LOC_Os02g37930Os.11900.1.S1_at11/112+22921729..22924608Hypoxia induced protein conserved region containing protein, expressed
LOC_Os02g37940Os.9038.1.S1_at10/112+22925110..22927625expressed protein
LOC_Os02g37950Os.53748.2.S1_x_at11/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.53748.1.S1_at10/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.2.S1_x_at4/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g37950Os.32787.3.S1_s_at1/112+22928261..22934030calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18483.1.S1_at--571--1551Chr02:22905911..22905935 (25 bp)
AGCTTCCATGGCTAGTGTGGCACCG
LOC_Os02g37910
Os.18483.1.S1_at--889--10071Chr02:22905899..22905923 (25 bp)
TAGTGTGGCACCGTCTTGCTCTGTT
LOC_Os02g37910
Os.18483.1.S1_at--711--3631Chr02:22905885..22905909 (25 bp)
CTTGCTCTGTTGTTGTTTGGTACAA
LOC_Os02g37910
Os.18483.1.S1_at--177--3171Chr02:22905552..22905669 (25 bp)
AATTGCTGTTCTTGTCATAGCCGTG
LOC_Os02g37910
Os.18483.1.S1_at--307--1671Chr02:22905534..22905558 (25 bp)
AGCCGTGGTGTTGCTAGGAATTACC
LOC_Os02g37910
Os.18483.1.S1_at--529--5391Chr02:22905442..22905466 (25 bp)
GAAGCAGACACTTCAGTCTAACTAC
LOC_Os02g37910
Os.18483.1.S1_at--812--3371Chr02:22905332..22905356 (25 bp)
CAGCCTGTTACGCATCACAAGTTTT
LOC_Os02g37910
Os.18483.1.S1_at--781--191Chr02:22905262..22905286 (25 bp)
ATTTCTCATGTCAATTTCGTTGCTT
LOC_Os02g37910
Os.18483.1.S1_at--189--691Chr02:22905224..22905248 (25 bp)
ATGACTGTTGTCTATTCTCTGACCC
LOC_Os02g37910
Os.18483.1.S1_at--869--3851Chr02:22905206..22905230 (25 bp)
CTGACCCCTCTTACATCATTGAAGT
LOC_Os02g37910
Os.18483.1.S1_at--4--51Chr02:22905189..22905213 (25 bp)
ATTGAAGTAGGCTCCGTTTGAACAT
LOC_Os02g37910
Target Sequence 
AGCTTCCATGGCTAGTGTGGCACCGTCTTGCTCTGTTGTTGTTTGGTACAATTGCTGTTCTTGTCATAGCCGTGGTGTTG
CTAGGAATTACCTGCTTATCAGCTGCTAATATTTTCACCAAGAAATCCAAGATGGAATAGCCATAAGGTACAGAGGACAG
AAGCAGACACTTCAGTCTAACTACNGATNGGAAAAGCTGATNCACACCGTCCATGGACGTTCCAGTGCCNTAGAACAACC
ATGAGATTTNCAATACCAATNTAACCCATTGCGCAGCCTGTTACGCATCACAAGTTTTATGAATGTAACTAACAATCTNT
ATACGTGTATAGCATGTTTAGAAATTTCTCATGTCAATTTCGTTGCTTTATGGTGAATAGGATGACTGTTGTCTATTCTC
TGACCCCTCTTACATCATTGAAGTAGGCTCCGTTTGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis