Browse Element(s) Details


OsAffx.29556.1.S1_at

Description tigr:9636.m03655
TID=OsAffx.29556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3638010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36340Os.2358.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.45796.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.2.S1_x_at10/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_at9/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.5.S1_x_at8/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_x_at6/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_x_at5/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.21921.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.14669.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36350NANA8+22783240..22783611hypothetical protein
LOC_Os08g36360NANA8+22784868..22788200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36370NANA8+22788575..22792322hypothetical protein
LOC_Os08g36380OsAffx.29556.1.S1_at10/118+22794762..22798182expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29556.1.S1_at--26--5951Chr08:22797617..22797641 (25 bp)
GAGCAGCAGCTCGTAGGCTTCGATT
LOC_Os08g36380
OsAffx.29556.1.S1_at--23--6591Chr08:22797596..22797620 (25 bp)
GATTCCAGCTGCTTTCTGAACGAGA
LOC_Os08g36380
OsAffx.29556.1.S1_at--1079--8931Chr08:22797569..22797588 (20 bp)
TGACGTTACCTGTTTCCTAGACTAT
LOC_Os08g36380
OsAffx.29556.1.S1_at--545--10031Chr08:22797202..22797225 (24 bp)
TAGACTATGATGGTGACGATCTTCC
LOC_Os08g36380
OsAffx.29556.1.S1_at--173--9471Chr08:22797171..22797195 (25 bp)
TCTGAGCTCTGTCTCACCAATGGAG
LOC_Os08g36380
OsAffx.29556.1.S1_at--313--2971Chr08:22797153..22797177 (25 bp)
AATGGAGCCCCTTGATAACACCGTG
LOC_Os08g36380
OsAffx.29556.1.S1_at--961--4391Chr08:22797044..22797068 (25 bp)
GCCAGCGCCGACAAAGACTGTTCGT
LOC_Os08g36380
OsAffx.29556.1.S1_at--1154--2331Chr08:22797032..22797056 (25 bp)
AAAGACTGTTCGTCCAAGCGTCCAG
LOC_Os08g36380
OsAffx.29556.1.S1_at--13--2691NONE
AAGCGTCCAGCTACACCAGAAGGGA
NONE
OsAffx.29556.1.S1_at--800--8611Chr08:22794985..22795009 (25 bp)
TGGTGTACCCGTTCGCCGTGGTGAA
LOC_Os08g36380
OsAffx.29556.1.S1_at--119--2491Chr08:22794810..22794834 (25 bp)
AACGGTCGCCGGTTTCACGAGGCTG
LOC_Os08g36380
Target Sequence 
GAGCAGCAGCTCGTAGGCTTCGATTCCAGCTGCTTTCTGAACGAGAAGAACAGTGACGTTACCTGTTTCCTAGACTATGA
TGGTGACGATCTTCCTCTGGCTCTGAGCTCTGTCTCACCAATGGAGCCCCTTGATAACACCGTGGGGCAGCCTCAAGCAG
AGCTTGAGCACCCTCCCAGCTCTGCCTCCTCCCACGGCAACGTGGGCCCACATGCCAGTGACACTGGCGCCAGCGCCGAC
AAAGACTGTTCGTCCAAGCGTCCAGCTACACCAGAAGGGAATGAGACGGCGAGCAGCAAGAGGAGCAGGACGACGGCGGC
GCCGCCGCCGCTCTCCGGTGCCGGGACATCGGTGGTGTACCCGTTCGCCGTGGTGAAGCCCAGCGGGCTGGACGGCGGCG
CGACGCTCGCCGACATCAACGCGCGGATCCTCACGAGGCCGCCCAGGCCGGTCAGGCACCCGGTGGGGGAGTTCGCGTGC
GCCCCGCGCGCGGCGGCCGGCGGCGACCGGCCGGCGCCGTCGGGCAAAACGGTCGCCGGTTTCACGAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis