Browse Element(s) Details


Os.12724.1.S1_a_at

Description gb:AB056060.1
DB_XREF= gi:13111467
TID=Os.12724.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) GAD mRNA for glutamate decarboxylase, complete cds, clone:OsGAD1
DEF=Oryza sativa (japonica cultivar-group) GAD mRNA for glutamate decarboxylase, complete cds, clone:OsGAD1.
FL= gb:AB056060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3632011/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36260OsAffx.25936.7.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.1.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.2.S1_x_at4/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.5.S1_x_at2/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36270NANA8+22724338..22724610hypothetical protein
LOC_Os08g36280Os.10827.1.S1_x_at11/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36280Os.46055.2.S1_x_at5/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein
LOC_Os08g36310Os.5179.1.A1_at11/118+22743259..22744959Cytochrome P450 family protein, expressed
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed
LOC_Os08g36340Os.2358.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.45796.1.S1_at11/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.2.S1_x_at10/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_at9/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.5.S1_x_at8/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_x_at6/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40360.1.S1_x_at5/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340Os.40855.4.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.21921.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed
LOC_Os08g36340OsAffx.14669.1.S1_at1/118+22771914..22782876K+ potassium transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12724.1.S1_a_at--223--7211Chr08:22746537..22746561 (25 bp)
GTCGATTCGAAATCCTCTCCAAGGA
LOC_Os08g36320
Os.12724.1.S1_a_at--338--1031Chr08:22746469..22746493 (25 bp)
AGGTACACCGTGTTCGACATCTCCG
LOC_Os08g36320
Os.12724.1.S1_a_at--168--411Chr08:22746361..22746385 (25 bp)
ATCAGGGAGGACTTCAGCCGGAGCC
LOC_Os08g36320
Os.12724.1.S1_a_at--1129--3931Chr08:22746328..22746352 (25 bp)
CGGCTCGTCTCGGACATCGTCAAGA
LOC_Os08g36320
Os.12724.1.S1_a_at--387--91Chr08:22746282..22746306 (25 bp)
ATTCGGCCCAGGTGCTGAAGATCTC
LOC_Os08g36320
Os.12724.1.S1_a_at--777--1651Chr08:22746256..22746280 (25 bp)
AGCGCCATCGCGAAGCAGCAATCGG
LOC_Os08g36320
Os.12724.1.S1_a_at--945--1271Chr08:22746183..22746207 (25 bp)
AGATCTTCGCGTACTGGAGGGACCA
LOC_Os08g36320
Os.12724.1.S1_a_at--402--5831Chr08:22746143..22746167 (25 bp)
GACCGGAATCTGCTAGTGTGGCTCT
LOC_Os08g36320
Os.12724.1.S1_a_at--917--5231Chr08:22746105..22746129 (25 bp)
GAATAACGTGGCATGCTCGATTTGT
LOC_Os08g36320
Os.12724.1.S1_a_at--916--3971Chr08:22746046..22746070 (25 bp)
CGGTGTACGGACATGGCTGCCCTTG
LOC_Os08g36320
Os.12724.1.S1_a_at--276--8491Chr08:22746033..22746057 (25 bp)
TGGCTGCCCTTGTTCTTATGTTGAA
LOC_Os08g36320
Target Sequence 
GTCGATTCGAAATCCTCTCCAAGGAGGCCGGTGTGCCCTTGGTGGCGTTCTCGCTCAAGGACAGCGGCAGGTACACCGTG
TTCGACATCTCCGAGCACCTGAGGAGGTTCGGCTGGATCGTGCCGGCGTACACCATGCCGGCCAACGCCGAGCACGTCGC
CGTCCTCCGCGTCGTCATCAGGGAGGACTTCAGCCGGAGCCTCGCCGAGCGGCTCGTCTCGGACATCGTCAAGATCCTGC
ACGAGCTGGACGCCCATTCGGCCCAGGTGCTGAAGATCTCCAGCGCCATCGCGAAGCAGCAATCGGGCGACGATGGCGNG
GTCACCAAGAAGAGCGTCCTGGAGACCGAGAGGGAGATCTTCGCGTACTGGAGGGACCAGGTGAAGAAGAAGCAGACCGG
AATCTGCTAGTGTGGCTCTGTGAGAAATGCTTGAATAACGTGGCATGCTCGATTTGTGCATGGGATGGCCGGATCGGATG
GGACTGACTGGCGGTGTACGGACATGGCTGCCCTTGTTCTTATGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12724.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis