Browse Element(s) Details


Os.36647.1.S1_x_at

Description gb:AK062965.1
DB_XREF= gi:32972983
TID=Os.36647.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D10, full insert sequence.
FL= gb:AK062965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g362901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36240NANA8+22712891..22713253hypothetical protein
LOC_Os08g36250Os.27812.2.S1_at11/118+22716534..22718174expressed protein
LOC_Os08g36250Os.52395.1.S1_x_at1/118+22716534..22718174expressed protein
LOC_Os08g36260OsAffx.25936.7.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.1.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.2.S1_x_at4/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.5.S1_x_at2/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36270NANA8+22724338..22724610hypothetical protein
LOC_Os08g36280Os.10827.1.S1_x_at11/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36280Os.46055.2.S1_x_at5/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein
LOC_Os08g36310Os.5179.1.A1_at11/118+22743259..22744959Cytochrome P450 family protein, expressed
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36647.1.S1_x_at--496--2591Chr03:21411888..21411912 (25 bp)
AACGACCTCAGGCTCATCGAGTAGT
NONE
Os.36647.1.S1_x_at--144--1091Chr03:21411946..21411970 (25 bp)
AGTGGCCTTGGCGAGTAACGATCTC
NONE
Os.36647.1.S1_x_at--793--1431Chr03:21412018..21412042 (25 bp)
AACGGCCCCAGTGAGTAGCGACTTT
NONE
Os.36647.1.S1_x_at--152--4611Chr03:21412035..21412059 (25 bp)
GCGACTTTGGCATTGTTGTGCGGCA
NONE
Os.36647.1.S1_x_at--557--5171Chr03:21412162..21412186 (25 bp)
GCAAGCAACTAGGTACGGCGGCATT
NONE
Os.36647.1.S1_x_at--354--9551Chr03:21412217..21412241 (25 bp)
TCTTTGGTTGTCACTGAGACCTGAA
NONE
Os.36647.1.S1_x_at--491--3851Chr03:21412230..21412254 (25 bp)
CTGAGACCTGAATGGTTCACATATT
NONE
Os.36647.1.S1_x_at--383--9471Chr03:21412301..21412325 (25 bp)
TCTGGGCATGCTGTGGGTATTGATT
NONE
Os.36647.1.S1_x_at--696--5872Chr03:21412351..21412375 (25 bp)
GAGCCGACTCGAATTGAGCTTCTTT
NONE
Os.36647.1.S1_x_at--882--5911Chr03:21412366..21412390 (25 bp)
GAGCTTCTTTCTGTTTTGTGATATA
NONE
Os.36647.1.S1_x_at--796--9372Chr03:21412393..21412417 (25 bp)
TCGAGGCTTAGGAGACACTGGCAAT
NONE
Target Sequence 
AACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGAT
CTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCAT
TGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTA
GCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTNGTGACCTCANCATGTTNGGT
GATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTT
TATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTG
AGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36647.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis