Browse Element(s) Details


Os.27812.2.S1_at

Description gb:AK108076.1
DB_XREF= gi:32993285
TID=Os.27812.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D12, full insert sequence.
FL= gb:AK108076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3625011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36188NANA8+22691257..22692201transposon protein, putative, Mariner sub-class
LOC_Os08g36197NANA8+22692823..22693767transposon protein, putative, Mariner sub-class
LOC_Os08g36206NANA8+22695017..22695877hypothetical protein
LOC_Os08g36220Os.49759.1.S1_x_at3/118+22696440..22698164Homeobox-leucine zipper protein HAT14, putative, expressed
LOC_Os08g36230NANA8+22704088..22704859expressed protein
LOC_Os08g36240NANA8+22712891..22713253hypothetical protein
LOC_Os08g36250Os.27812.2.S1_at11/118+22716534..22718174expressed protein
LOC_Os08g36250Os.52395.1.S1_x_at1/118+22716534..22718174expressed protein
LOC_Os08g36260OsAffx.25936.7.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.1.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.2.S1_x_at4/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.5.S1_x_at2/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36270NANA8+22724338..22724610hypothetical protein
LOC_Os08g36280Os.10827.1.S1_x_at11/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36280Os.46055.2.S1_x_at5/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27812.2.S1_at--695--1351Chr08:22716885..22716909 (25 bp)
AGAGAGCATGATGACGTGGCGTCCT
LOC_Os08g36250
Os.27812.2.S1_at--908--7551Chr08:22716852..22716876 (25 bp)
GGGCCACGTAGGTCTCATGATGACT
LOC_Os08g36250
Os.27812.2.S1_at--928--3471Chr08:22716837..22716861 (25 bp)
CATGATGACTCACCCGCTACGTAGG
LOC_Os08g36250
Os.27812.2.S1_at--428--3071Chr08:22716672..22716696 (25 bp)
AATCTTTCCTGTACTGTCATCTGTA
LOC_Os08g36250
Os.27812.2.S1_at--1159--9911Chr08:22716661..22716685 (25 bp)
TACTGTCATCTGTACAGATTTTCGC
LOC_Os08g36250
Os.27812.2.S1_at--1106--2131Chr08:22716648..22716672 (25 bp)
ACAGATTTTCGCAGGATAGGCGTAT
LOC_Os08g36250
Os.27812.2.S1_at--232--271Chr08:22716633..22716657 (25 bp)
ATAGGCGTATAGCTACGTCGCTTCT
LOC_Os08g36250
Os.27812.2.S1_at--439--9911Chr08:22716620..22716644 (25 bp)
TACGTCGCTTCTACGCCTGTTTTTG
LOC_Os08g36250
Os.27812.2.S1_at--831--9951Chr08:22716609..22716633 (25 bp)
TACGCCTGTTTTTGCAGCAGCAGAT
LOC_Os08g36250
Os.27812.2.S1_at--724--10731Chr08:22716598..22716622 (25 bp)
TTGCAGCAGCAGATGGATAGGATAG
LOC_Os08g36250
Os.27812.2.S1_at--459--9911Chr08:22716538..22716562 (25 bp)
TACTCTCCTACTCCTACATTTATGA
LOC_Os08g36250
Target Sequence 
AGAGAGCATGATGACGTGGCGTCCTGACATGTGGGGCCACGTAGGTCTCATGATGACTCACCCGCTACGTAGGATAAAAC
CGGGGTTAAAACCATTAAAGGATGTAAAGCGAACGGTTTTGTAAGTTAAGTGATGTTATATATCTGGTTTTACGGTTGGG
GGATGATTTTGTAATTTGATGACAAGTTGAGAGTCCTTGGGTGTACTTTTTCCAATCTTTCCTGTACTGTCATCTGTACA
GATTTTCGCAGGATAGGCGTATAGCTACGTCGCTTCTACGCCTGTTTTTGCAGCAGCAGATGGATAGGATAGGATAGGAT
GGGATGGGATGGGATGAGANGAGCAGATACTCTCCTACTCCTACATTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27812.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis