Browse Element(s) Details


Os.5179.1.A1_at

Description gb:AK072861.1
DB_XREF= gi:32982884
TID=Os.5179.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141H24, full insert sequence.
FL= gb:AK072861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3631011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36260OsAffx.25936.7.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.1.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.2.S1_x_at4/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.5.S1_x_at2/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36270NANA8+22724338..22724610hypothetical protein
LOC_Os08g36280Os.10827.1.S1_x_at11/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36280Os.46055.2.S1_x_at5/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein
LOC_Os08g36310Os.5179.1.A1_at11/118+22743259..22744959Cytochrome P450 family protein, expressed
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5179.1.A1_at--223--5331Chr08:22744435..22744459 (25 bp)
GAAGGGCTCGATGGTGATCTTCAAC
LOC_Os08g36310
Os.5179.1.A1_at--316--4511Chr08:22744700..22744724 (25 bp)
GCCGAGGAGTTGGACATGCGCCACA
LOC_Os08g36310
Os.5179.1.A1_at--261--5671Chr08:22744712..22744736 (25 bp)
GACATGCGCCACAGGTTTACCATTG
LOC_Os08g36310
Os.5179.1.A1_at--201--10351Chr08:22744727..22744751 (25 bp)
TTTACCATTGCCAACTTCCGTGCCA
LOC_Os08g36310
Os.5179.1.A1_at--431--2951Chr08:22744760..22744784 (25 bp)
AAGGCCGTGCCCGTTGTGGTCAGCT
LOC_Os08g36310
Os.5179.1.A1_at--230--7511Chr08:22744775..22744799 (25 bp)
GTGGTCAGCTAGTTGCTCTCTTTCA
LOC_Os08g36310
Os.5179.1.A1_at--327--1571Chr08:22744781..22744805 (25 bp)
AGCTAGTTGCTCTCTTTCACTGCAT
LOC_Os08g36310
Os.5179.1.A1_at--632--2971Chr08:22744807..22744831 (25 bp)
AATGGTGAATTGTGGCGCGTACGTC
LOC_Os08g36310
Os.5179.1.A1_at--111--7551Chr08:22744818..22744842 (25 bp)
GTGGCGCGTACGTCTCTCCATTTGG
LOC_Os08g36310
Os.5179.1.A1_at--720--4311Chr08:22744835..22744859 (25 bp)
CCATTTGGCCCACATATGTCAAGTT
LOC_Os08g36310
Os.5179.1.A1_at--1089--2691Chr08:22744874..22744898 (25 bp)
AAGCTAGTGGTGTAAGTTGTTCAAT
LOC_Os08g36310
Target Sequence 
GAAGGGCTCGATGGTGATCTTCAACGTGTGGGCGATAATGCGCGACCCGGCGGCGTGGGAGAGGCCGGAGGAGTTCATGC
CGGAGCGGTTCATCCGCCGGGGAGATGATGACGAGGTGGATTTCTGGGGGAAGACGTTCGAGTTCATCCCGTTCGGGTCC
GGCCGGAGGGTGTGCGCCGGCCTGCCGATGGCGGAACGTGTCGTGCCGTTCATGCTGGCGTCGCTGCTGCGCGCGTTCGA
GTGGCGACTCCCCGACGGCGTGTCGGCCGAGGAGTTGGACATGCGCCACAGGTTTACCATTGCCAACTTCCGTGCCATCC
CTCTCAAGGCCGTGCCCGTTGTGGTCAGCTAGTTGCTCTCTTTCACTGCATCAATGGTGAATTGTGGCGCGTACGTCTCT
CCATTTGGCCCACATATGTCAAGTTGGATATTATAATTGAAGCTAGTGGTGTAAGTTGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5179.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis