Browse Element(s) Details


OsAffx.25414.1.S1_at

Description tigr:9631.m03687
TID=OsAffx.25414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3845010/11hypothetical protein
LOC_Os04g093801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g289501/11AC transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38410OsAffx.15559.1.S1_at3/113+21275877..21276954hypothetical protein
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25414.1.S1_at--166--8571Chr03:21299485..21299509 (25 bp)
TGGATAAGGGTTCCGGTACAACATC
LOC_Os03g38450
OsAffx.25414.1.S1_at--584--2071Chr03:21300433..21300452 (20 bp)
ACATACAGGTACTTCTTATCCAACT
LOC_Os03g38450
OsAffx.25414.1.S1_at--177--10211Chr03:21300460..21300484 (25 bp)
TATTTTACCACAACTTTCGTGAAAT
LOC_Os03g38450
OsAffx.25414.1.S1_at--801--3071Chr03:21300482..21300506 (25 bp)
AATCAAGGCTTTAATTACTCCATGG
LOC_Os03g38450
OsAffx.25414.1.S1_at--572--7991Chr03:21300505..21300529 (25 bp)
GGATGACAAGTGATGATGTTGCCAT
LOC_Os03g38450
OsAffx.25414.1.S1_at--851--2452Chr03:21300533..21300557 (25 bp)
AACAATGGCCACCTCAATGAATAAG
LOC_Os03g38450
OsAffx.25414.1.S1_at--677--6151Chr03:21300578..21300602 (25 bp)
GAGGTCAAATCTTACTCTTGTTGTG
LOC_Os03g38450
OsAffx.25414.1.S1_at--52--9911Chr03:21300590..21300614 (25 bp)
TACTCTTGTTGTGGCATACTTTCTT
LOC_Os03g38450
OsAffx.25414.1.S1_at--913--8271Chr03:21300602..21300626 (25 bp)
GGCATACTTTCTTGAACCTAGGTTT
LOC_Os03g38450
OsAffx.25414.1.S1_at--1091--2491NONE
AACATGCTGAGGTGTATGATCCTAA
NONE
OsAffx.25414.1.S1_at--341--1113Chr04:4983600..4983619 (20 bp)
AGTGATTGTCGGTGATATAGGCCTG
LOC_Os04g09380
Target Sequence 
TGGATAAGGGTTCCGGTACAACATCGGTTGAAACATACAGGTACTTCTTATCCAACTGCAAATTTATTTTACCACAACTT
TCGTGAAATCAAGGCTTTAATTACTCCATGGATGACAAGTGATGATGTTGCCATCAAAACAATGGCCACCTCAATGAATA
AGAAGGTTGAGAAGTACTGGAAGAGGTCAAATCTTACTCTTGTTGTGGCATACTTTCTTGAACCTAGGTTTAAGACAAAG
GCAGTAGAGTATAACATGCTGAGGTGTATGATCCTAATAAGAGGGTTGGATGAGGTTGCAGAGACCTTGGTTGCTAATTT
GACGCTTGACGAGATTGATGATATGAAAAGCAACAGAGTAGTGATTGTCGGTGATATAGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis