Browse Element(s) Details


OsAffx.25413.1.S1_s_at

Description tigr:9631.m03686
TID=OsAffx.25413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3844011/11transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38390Os.53139.1.S1_at11/113+21261335..21268150GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38400OsAffx.25412.1.S1_at10/113+21269960..21270393GDSL-motif lipase/hydrolase, putative
LOC_Os03g38410OsAffx.15559.1.S1_at3/113+21275877..21276954hypothetical protein
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25413.1.S1_s_at--1162--8932Chr05:17705209..17705233 (25 bp)
TGACGTCGAGGCATCTGCGAACGGC
NONE
OsAffx.25413.1.S1_s_at--556--3811Chr03:21289659..21289683 (25 bp)
CTCCTCCAGCATCCACTGAATTAAG
LOC_Os03g38440
OsAffx.25413.1.S1_s_at--788--4712Chr05:17711066..17711085 (20 bp)
GCTGGCGAGAATTCTTTTGCTGAGA
NONE
OsAffx.25413.1.S1_s_at--983--6752Chr05:17711101..17711125 (25 bp)
GTTCAAAGTAGAGCCACTGCCATCA
NONE
OsAffx.25413.1.S1_s_at--1127--3552Chr05:17711121..17711145 (25 bp)
CATCATCCAGTGCACACGTGTGTGA
NONE
OsAffx.25413.1.S1_s_at--1081--5252Chr05:17711248..17711272 (25 bp)
GAATGTTATTACCTGCCAAAACTCT
NONE
OsAffx.25413.1.S1_s_at--176--8672Chr05:17711272..17711295 (24 bp)
TGTGGGATCTAAATTGTGTCAGCAG
NONE
OsAffx.25413.1.S1_s_at--195--10171Chr03:21292366..21292390 (25 bp)
TATCAGACCATGTCGGTATACATTG
LOC_Os03g38440
OsAffx.25413.1.S1_s_at--1033--6231Chr03:21292390..21292414 (25 bp)
GATGGACTAGGTTGACTCTGCCAAT
LOC_Os03g38440
OsAffx.25413.1.S1_s_at--790--5711Chr03:21292403..21292427 (25 bp)
GACTCTGCCAATTGTTTGTGGCCAC
LOC_Os03g38440
OsAffx.25413.1.S1_s_at--826--7551Chr03:21292420..21292444 (25 bp)
GTGGCCACAATCTGGACCTATGATT
LOC_Os03g38440
Target Sequence 
TGACGTCGAGGCATCTGCGAACGGCGGCCTCGATTCGCCGATTGCTCCTCCAGCATCCACTGAATTAAGTTTGCTGGGTG
CAGGTTTTTTTTTGCTGAGAGCAGCTGGCGAGAATTCTTTTGCTGAGAGTAGTTTTTTGTTCAAAGTAGAGCCACTGCCA
TCATCCAGTGCACACGTGTGTGATCTATTAATAGATTTTAGCCATTTAATAGCAAGGTTGCATTTTGATTAGACAACACC
TTGAAGGGGATAACTAATATTTGTGCACAAGTGTTGTAACTTATGAATGTTATTACCTGCCAAAACTCTGTGGGATCTAA
ATTGTGTCAGCAGAAGACATCTGAATATCAGACCATGTCGGTATACATTGATGGACTAGGTTGACTCTGCCAATTGTTTG
TGGCCACAATCTGGACCTATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25413.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis