Browse Element(s) Details


OsAffx.3434.1.S1_at

Description tigr:9631.m03690
TID=OsAffx.3434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3848010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3434.1.S1_at--229--2211Chr03:21313647..21313797 (25 bp)
ACAAGCTGTCTATTTTCGAGCCCAA
LOC_Os03g38480
OsAffx.3434.1.S1_at--1032--5491Chr03:21313810..21313834 (25 bp)
GAACACCTGCAGCTCAGTGAACAGT
LOC_Os03g38480
OsAffx.3434.1.S1_at--347--2131Chr03:21313830..21313994 (25 bp)
ACAGTGAAATTCTCAAGCCGCCTTT
LOC_Os03g38480
OsAffx.3434.1.S1_at--234--4991Chr03:21314347..21314371 (25 bp)
GCATGCTGTGGCTTTGGATTCTACC
LOC_Os03g38480
OsAffx.3434.1.S1_at--105--6571Chr03:21314363..21314387 (25 bp)
GATTCTACCGTAGTTTGCACCCAGG
LOC_Os03g38480
OsAffx.3434.1.S1_at--1140--9971NONE
TACCAATGGCGCAAAGATCTCCCTG
NONE
OsAffx.3434.1.S1_at--543--7611Chr03:21315834..21315858 (25 bp)
GGGAATCATACTACAGCAGGCGCTT
LOC_Os03g38480
OsAffx.3434.1.S1_at--369--271Chr03:21315883..21315907 (25 bp)
ATAGTTCGGTCGTTTACTCCAATGG
LOC_Os03g38480
OsAffx.3434.1.S1_at--407--8471Chr03:21316055..21316078 (24 bp)
TGGCCCATGATACCACATTGCTGAT
LOC_Os03g38480
OsAffx.3434.1.S1_at--1023--3211Chr03:21316122..21316146 (25 bp)
CAAGAGTGTCTCGAGTTGCTGGGCC
LOC_Os03g38480
OsAffx.3434.1.S1_at--670--5031Chr03:21316587..21316609 (23 bp)
GCAGACCATCGTCGCGCTTGAGATA
LOC_Os03g38480
Target Sequence 
ACAAGCTGTCTATTTTCGAGCCCAAACTCTCAGCGTCGAACACCTGCAGCTCAGTGAACAGTGAAATTCTCAAGCCGCCT
TTGGAAATTAAACATCAATTCATCAAATGGTGGAATTCATGGGTGCATGGGCTAGGATATCAGAGCTGCAAGATGAGAGG
TTTGGAAAGCTGGGGGCAGCTGGAGAGCAAGCATGCTGTGGCTTTGGATTCTACCGTAGTTTGCACCCAGGCAGCCATTT
GTAAGCTCCCTCTTACCAATGGCGCAAAGATCTCCCTGCCATCGATGGGAATCATACTACAGCAGGCGCTTGACCTCACT
ATGACCACCAAGACAATAGTTCGGTCGTTTACTCCAATGGCCCATGATACCACATTGCTGATCACAGAGCTAGTAGCTGT
GGCAAGAGAAGAGCATGCTCTGTTGCAAGAGTGTCTCGAGTTGCTGGGCCGAGTGTCTGCATTGCAGACCATCGTCGCGC
TTGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis