Browse Element(s) Details


Os.18399.1.S1_at

Description gb:AK065977.1
DB_XREF= gi:32975995
TID=Os.18399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049I20, full insert sequence.
FL= gb:AK065977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3844011/11transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38390Os.53139.1.S1_at11/113+21261335..21268150GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38400OsAffx.25412.1.S1_at10/113+21269960..21270393GDSL-motif lipase/hydrolase, putative
LOC_Os03g38410OsAffx.15559.1.S1_at3/113+21275877..21276954hypothetical protein
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18399.1.S1_at--250--2452Chr05:17710871..17710895 (25 bp)
AACAACCATTGTGTTCCAGGAACAT
NONE
Os.18399.1.S1_at--965--7412Chr05:17710881..17710905 (25 bp)
GTGTTCCAGGAACATTTTGTTATCT
NONE
Os.18399.1.S1_at--124--10272Chr05:17710896..17710920 (25 bp)
TTTGTTATCTTAGTTTGGTCCGTAG
NONE
Os.18399.1.S1_at--744--412Chr05:17710902..17710926 (25 bp)
ATCTTAGTTTGGTCCGTAGTGTGAA
NONE
Os.18399.1.S1_at--615--8552Chr05:17710911..17710935 (25 bp)
TGGTCCGTAGTGTGAATAAAACTTT
NONE
Os.18399.1.S1_at--501--2031Chr03:21291987..21292011 (25 bp)
ACTTTGTATGTATCTATGCTCACCA
LOC_Os03g38440
Os.18399.1.S1_at--74--6931Chr03:21291992..21292016 (25 bp)
GTATGTATCTATGCTCACCAGTATA
LOC_Os03g38440
Os.18399.1.S1_at--461--9091Chr03:21292003..21292027 (25 bp)
TGCTCACCAGTATATATGTCCTTAA
LOC_Os03g38440
Os.18399.1.S1_at--748--2452Chr05:17710970..17710994 (25 bp)
AACAATTTTTTATCTATGCTCACAA
NONE
Os.18399.1.S1_at--626--4831Chr03:21292043..21292067 (25 bp)
GCTCACAAGTATATATGTCCTTCTT
LOC_Os03g38440
Os.18399.1.S1_at--844--10312Chr05:17711021..17711045 (25 bp)
TTTCACTATGCAGTTTGCTGGGTGC
NONE
Target Sequence 
AACAACCATTGTGTTCCAGGAACATTTTGTTATCTTAGTTTGGTCCGTAGTGTGAATAAAACTTTGTATGTATCTATGCT
CACCAGTATATATGTCCTTAACAATTTTTTATCTATGCTCACAAGTATATATGTCCTTCTTAACAATTTTTTTCACTATG
CAGTTTGCTGGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis