Browse Element(s) Details


OsAffx.25412.1.S1_at

Description tigr:9631.m03682
TID=OsAffx.25412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3840010/11GDSL-motif lipase/hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38370Os.19439.2.S1_at10/113+21256619..21257911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g38390Os.53139.1.S1_at11/113+21261335..21268150GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38400OsAffx.25412.1.S1_at10/113+21269960..21270393GDSL-motif lipase/hydrolase, putative
LOC_Os03g38410OsAffx.15559.1.S1_at3/113+21275877..21276954hypothetical protein
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25412.1.S1_at--233--8591Chr03:21270339..21270363 (25 bp)
TGGTGCGCACTGAAACAGTCATGCG
LOC_Os03g38400
OsAffx.25412.1.S1_at--576--1951Chr03:21270331..21270355 (25 bp)
ACTGAAACAGTCATGCGTGGCCCTC
LOC_Os03g38400
OsAffx.25412.1.S1_at--682--611Chr03:21270319..21270343 (25 bp)
ATGCGTGGCCCTCCTGATGGCTTTG
LOC_Os03g38400
OsAffx.25412.1.S1_at--167--3991Chr03:21270316..21270340 (25 bp)
CGTGGCCCTCCTGATGGCTTTGGCT
LOC_Os03g38400
OsAffx.25412.1.S1_at--118--2211NONE
ACAACTTCGTCGACTTACTCGCTGA
NONE
OsAffx.25412.1.S1_at--1137--2511Chr03:21270022..21270138 (25 bp)
AACTTCGTCGACTTACTCGCTGATA
LOC_Os03g38400
OsAffx.25412.1.S1_at--740--9411Chr03:21270018..21270134 (25 bp)
TCGTCGACTTACTCGCTGATATTTT
LOC_Os03g38400
OsAffx.25412.1.S1_at--663--5691Chr03:21270013..21270129 (25 bp)
GACTTACTCGCTGATATTTTTGGGA
LOC_Os03g38400
OsAffx.25412.1.S1_at--961--1991Chr03:21270008..21270028 (21 bp)
ACTCGCTGATATTTTTGGGATAATC
LOC_Os03g38400
OsAffx.25412.1.S1_at--1102--8631Chr03:21269993..21270017 (25 bp)
TGGGATAATCGATCTAACATTCAAC
LOC_Os03g38400
OsAffx.25412.1.S1_at--909--6451Chr03:21269990..21270014 (25 bp)
GATAATCGATCTAACATTCAACGCA
LOC_Os03g38400
Target Sequence 
TGGTGCGCACTGAAACAGTCATGCGTGGCCCTCCTGATGGCTTTGGCTTGCTGCCTAACTACGTGCGCGCGCGGCGCAGT
CGAGGCGCTGTACGTGCTGGGCGACTCGCAGGCGGACGTAGGGAACAACAACTACCTGCCGGCGTCGCTGCTCAAGGCCA
ACTACCCTCACAATGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCGACTTA
CTCGCTGATATTTTTGGGATAATCGATCTAACATTCAACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis