Browse Element(s) Details


Os.53139.1.S1_at

Description gb:AK070980.1
DB_XREF= gi:32981003
TID=Os.53139.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073A07, full insert sequence.
FL= gb:AK070980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3839011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38370Os.19439.2.S1_at10/113+21256619..21257911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g38390Os.53139.1.S1_at11/113+21261335..21268150GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38400OsAffx.25412.1.S1_at10/113+21269960..21270393GDSL-motif lipase/hydrolase, putative
LOC_Os03g38410OsAffx.15559.1.S1_at3/113+21275877..21276954hypothetical protein
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53139.1.S1_at--308--691Chr03:21262307..21262331 (25 bp)
ATGAGCGAGACGCATCCGGACTTCA
LOC_Os03g38390
Os.53139.1.S1_at--1120--10511Chr03:21262243..21262264 (22 bp)
TTCGTTACCCAGAGGCACATGGCTA
LOC_Os03g38390
Os.53139.1.S1_at--224--7891Chr03:21261778..21261802 (25 bp)
GGTTAAAGCAGCGTGCTGTGGCCTA
LOC_Os03g38390
Os.53139.1.S1_at--1139--3991Chr03:21261767..21261791 (25 bp)
CGTGCTGTGGCCTAGGAGATAACAA
LOC_Os03g38390
Os.53139.1.S1_at--945--4591Chr03:21261720..21261744 (25 bp)
GCGAGCGTGTACTGCGACAACCGGA
LOC_Os03g38390
Os.53139.1.S1_at--250--5611Chr03:21261705..21261729 (25 bp)
GACAACCGGACGAGCTACATGTTCT
LOC_Os03g38390
Os.53139.1.S1_at--532--7811Chr03:21261607..21261631 (25 bp)
GGTTTCCCCGAAAAATATCAAGCAG
LOC_Os03g38390
Os.53139.1.S1_at--15--5071Chr03:21261586..21261610 (25 bp)
GCAGCTCACTGAGAGTTAGGCATTA
LOC_Os03g38390
Os.53139.1.S1_at--838--9831Chr03:21261559..21261583 (25 bp)
TAAAGCCAAGAGTACGTGTCTACTG
LOC_Os03g38390
Os.53139.1.S1_at--739--7451Chr03:21261544..21261568 (25 bp)
GTGTCTACTGGTACTACTATACTAT
LOC_Os03g38390
Os.53139.1.S1_at--531--311Chr03:21261521..21261545 (25 bp)
ATACTACTATTATCACCACTGGAGA
LOC_Os03g38390
Target Sequence 
ATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGA
GGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGA
GCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTATG
AAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAA
AGCCAAGAGTACGTGTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis