Browse Element(s) Details


OsAffx.25415.1.S1_at

Description tigr:9631.m03689
TID=OsAffx.25415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative GDSL-like lipaseacylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3847011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38430NANA3+21285415..21287151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25415.1.S1_at--30--6511Chr03:21309093..21309117 (25 bp)
GATATAATCAATCGCGTCCTGCTGA
LOC_Os03g38470
OsAffx.25415.1.S1_at--37--8651Chr03:21309127..21309151 (25 bp)
TGGGCACCCAAGACCAATTCATCAG
LOC_Os03g38470
OsAffx.25415.1.S1_at--1121--431Chr03:21309513..21309537 (25 bp)
ATGACCTCGGGACGCGAAGGCTTTT
LOC_Os03g38470
OsAffx.25415.1.S1_at--259--4892Chr03:21309532..21309556 (25 bp)
GCTTTTATTTGTGGGCGCGGCGCCA
LOC_Os03g38470
OsAffx.25415.1.S1_at--438--1831Chr03:21309606..21309630 (25 bp)
ACGCGGAGGCCAATTACCTATCAGC
LOC_Os03g38470
OsAffx.25415.1.S1_at--612--10171Chr03:21309624..21309648 (25 bp)
TATCAGCTCGGTACAACAACGCCGT
LOC_Os03g38470
OsAffx.25415.1.S1_at--542--6991Chr03:21309712..21309736 (25 bp)
GTACACCGCGTTGCTGCAGTACATC
LOC_Os03g38470
OsAffx.25415.1.S1_at--596--731Chr03:21311273..21311297 (25 bp)
ATGTTCCAGTGCACTCCGGCAAGCT
LOC_Os03g38470
OsAffx.25415.1.S1_at--799--9151Chr03:21311303..21311327 (25 bp)
TGCGCCAACCGAACAAGCTACATGT
LOC_Os03g38470
OsAffx.25415.1.S1_at--83--8651Chr03:21311330..21311354 (25 bp)
TGGGACATCGTCCATCCGACGGAGA
LOC_Os03g38470
OsAffx.25415.1.S1_at--324--5991Chr03:21311365..21311389 (25 bp)
GAGACTCACCAAGGTTGCGTTTGAT
LOC_Os03g38470
Target Sequence 
GATATAATCAATCGCGTCCTGCTGAGCCAGCTCGTGGGCACCCAAGACCAATTCATCAGCTCACTGGCCAACTCCCTGAA
ACGCCAGCTGCAGAGGATGTATGACCTCGGGACGCGAAGGCTTTTATTTGTGGGCGCGGCGCCACTGGGGTGTTGCCTGA
TGCTGCGGGAGCAGAGCCCCACCAAGGAATGCCACGCGGAGGCCAATTACCTATCAGCTCGGTACAACAACGCCGTCACC
ATGCTCCTCCGCGACATGAGCGCGATGCACCCGGGCATGAGCTACGCCTTCTTCGACACGTACACCGCGTTGCTGCAGTA
CATCCGGCAGCCAGAGGCATATGGTTATACTGAGGTGAAAGCAGCATGCTGCGGCCTAGGGGACAACAACGCCATGTTCC
AGTGCACTCCGGCAAGCTCGTACTGCGCCAACCGAACAAGCTACATGTTCTGGGACATCGTCCATCCGACGGAGATCACG
GCCAAGAGACTCACCAAGGTTGCGTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis