Browse Element(s) Details


Os.31503.2.S1_at

Description gb:AK107232.1
DB_XREF= gi:32992441
TID=Os.31503.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E05, full insert sequence.
FL= gb:AK107232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g384801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38440OsAffx.25413.1.S1_s_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38440Os.18399.1.S1_at11/113+21289444..21292476transposase, putative, expressed
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31503.2.S1_at--533--891Chr03:17531300..17531324 (25 bp)
AGGCCGCTGCCCACCGAATGGAGAG
NONE
Os.31503.2.S1_at--606--7031Chr03:17531198..17531222 (25 bp)
GTACACGCTGCTCGGCACGAGGATT
NONE
Os.31503.2.S1_at--741--7912Chr06:5143669..5143692 (24 bp)
GGATTGAGGAATCACTGACAACTTT
NONE
Os.31503.2.S1_at--158--3331Chr03:17531166..17531190 (25 bp)
CACTGACAACTTTGATGAGGAACGG
NONE
Os.31503.2.S1_at--688--10491Chr03:17531111..17531135 (25 bp)
TTCTAGCGGGAGAAGTATACGTGGC
NONE
Os.31503.2.S1_at--1129--6872Chr06:5143567..5143587 (21 bp)
GTATACGTGGCTGGGAATCTCTGAT
NONE
Os.31503.2.S1_at--899--9932Chr06:5143565..5143587 (23 bp)
TACGTGGCTGGGAATCTCTGATGTG
NONE
Os.31503.2.S1_at--570--5291Chr03:17531062..17531086 (25 bp)
GAAGGCGAATGCCATGTCACGCACT
NONE
Os.31503.2.S1_at--407--5271Chr03:17531056..17531080 (25 bp)
GAATGCCATGTCACGCACTGTGGAC
NONE
Os.31503.2.S1_at--623--751Chr03:17531049..17531073 (25 bp)
ATGTCACGCACTGTGGACACCCTTA
NONE
Os.31503.2.S1_at--218--7532Chr03:21314697..21314761 (25 bp)
GTGGACACCCTTAGGCCAGTCACAA
LOC_Os03g38480
Target Sequence 
AGGCCGCTGCCCACCGAATGGAGAGAGAGAGAGAGAGGGAGAGGGAGCTGCGGAGAGACCGAGGGAGATTGGGGCGCCTC
GGGTGTTGAGGCGGAGTGAGGCGTACACGCTGCTCGGCACGAGGATTGAGGAATCACTGACAACTTTGATGAGGAACGGG
GAGCTTTGTTTGGCTCCGCGTTCTTCAGTTTCTAGCGGGAGAAGTATACGTGGCTGGGAATCTCTGATGTGGAAGGGGGA
AGGCGAATGCCATGTCACGCACTGTGGACACCCTTAGGCCAGTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31503.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis