Browse Element(s) Details


OsAffx.25416.1.S1_at

Description tigr:9631.m03691
TID=OsAffx.25416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative chloroplast differentiation and palisade development-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3849011/11DAG protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class
LOC_Os03g38534NANA3+21346727..21347610hypothetical protein
LOC_Os03g38540Os.34624.2.S1_s_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38540Os.34624.1.S1_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25416.1.S1_at--108--9691Chr03:21319013..21319037 (25 bp)
TCACGCGGAGCGAAGACCGCGTCGT
LOC_Os03g38490
OsAffx.25416.1.S1_at--997--7331Chr03:21319049..21319073 (25 bp)
GGGTACTCGCCGCTGAACGACCCGT
LOC_Os03g38490
OsAffx.25416.1.S1_at--836--8731Chr03:21319062..21319086 (25 bp)
TGAACGACCCGTCCCCAAACTGGAG
LOC_Os03g38490
OsAffx.25416.1.S1_at--573--2371Chr03:21319078..21319102 (25 bp)
AAACTGGAGCAATCGGCCGCCCAAG
LOC_Os03g38490
OsAffx.25416.1.S1_at--462--8411Chr03:21319092..21319116 (25 bp)
GGCCGCCCAAGGAGACTATCCTGTT
LOC_Os03g38490
OsAffx.25416.1.S1_at--210--1411Chr03:21319104..21319128 (25 bp)
AGACTATCCTGTTGGACGGCTGCGA
LOC_Os03g38490
OsAffx.25416.1.S1_at--97--8831Chr03:21319113..21319137 (25 bp)
TGTTGGACGGCTGCGACTACGAGCA
LOC_Os03g38490
OsAffx.25416.1.S1_at--849--791Chr03:21319151..21319175 (25 bp)
ATGGAGTTCCCGACCGATCCCAAGC
LOC_Os03g38490
OsAffx.25416.1.S1_at--468--6331Chr03:21319166..21319190 (25 bp)
GATCCCAAGCCCTCCGAGGAAGATA
LOC_Os03g38490
OsAffx.25416.1.S1_at--210--9291Chr03:21319178..21319202 (25 bp)
TCCGAGGAAGATATGGTCGCCGCAT
LOC_Os03g38490
OsAffx.25416.1.S1_at--162--7171Chr03:21319193..21319217 (25 bp)
GTCGCCGCATATGTTAAGACCCTCG
LOC_Os03g38490
Target Sequence 
TCACGCGGAGCGAAGACCGCGTCGTCGGGTGGGTCTGGGTACTCGCCGCTGAACGACCCGTCCCCAAACTGGAGCAATCG
GCCGCCCAAGGAGACTATCCTGTTGGACGGCTGCGACTACGAGCACTGGCTCATCGTCATGGAGTTCCCGACCGATCCCA
AGCCCTCCGAGGAAGATATGGTCGCCGCATATGTTAAGACCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis