Browse Element(s) Details


Os.34624.1.S1_at

Description gb:AK120119.1
DB_XREF= gi:37989742
TID=Os.34624.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025N19, full insert sequence.
FL= gb:AK120119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3854011/11formiminotransferase-cyclodeaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class
LOC_Os03g38534NANA3+21346727..21347610hypothetical protein
LOC_Os03g38540Os.34624.2.S1_s_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38540Os.34624.1.S1_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34624.1.S1_at--1059--10351Chr03:21349382..21349406 (25 bp)
TTTTTCCCGCTTCCAGATTTGCCCG
LOC_Os03g38540
Os.34624.1.S1_at--692--9171Chr03:21349401..21349425 (25 bp)
TGCCCGCAACATCTGTGCAGAAGAT
LOC_Os03g38540
Os.34624.1.S1_at--515--8691Chr03:21349414..21349438 (25 bp)
TGTGCAGAAGATAGTTTCCAGGAAC
LOC_Os03g38540
Os.34624.1.S1_at--233--6831Chr03:21349427..21349451 (25 bp)
GTTTCCAGGAACTTAATCACCAGAT
LOC_Os03g38540
Os.34624.1.S1_at--594--8171Chr03:21349434..21349458 (25 bp)
GGAACTTAATCACCAGATGATACAT
LOC_Os03g38540
Os.34624.1.S1_at--194--3551Chr03:21349456..21349480 (25 bp)
CATCTGATAATTGTGTGAGCCTGTA
LOC_Os03g38540
Os.34624.1.S1_at--371--7471Chr03:21349468..21349492 (25 bp)
GTGTGAGCCTGTAAATTATCTTCCA
LOC_Os03g38540
Os.34624.1.S1_at--467--5871Chr03:21349472..21349496 (25 bp)
GAGCCTGTAAATTATCTTCCACGTC
LOC_Os03g38540
Os.34624.1.S1_at--43--4431Chr03:21349474..21349498 (25 bp)
GCCTGTAAATTATCTTCCACGTCAA
LOC_Os03g38540
Os.34624.1.S1_at--753--7031Chr03:21349478..21349502 (25 bp)
GTAAATTATCTTCCACGTCAACTTA
LOC_Os03g38540
Os.34624.1.S1_at--487--10131Chr03:21349484..21349508 (25 bp)
TATCTTCCACGTCAACTTAAAAATG
LOC_Os03g38540
Target Sequence 
TTTTTCCCGCTTCCAGATTTGCCCGCAACATCTGTGCAGAAGATAGTTTCCAGGAACTTAATCACCAGATGATACATCTG
ATAATTGTGTGAGCCTGTAAATTATCTTCCACGTCAACTTAAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis