Browse Element(s) Details


Os.51675.1.S1_at

Description gb:AK063357.1
DB_XREF= gi:32973375
TID=Os.51675.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C07, full insert sequence.
FL= gb:AK063357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g385807/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class
LOC_Os03g38534NANA3+21346727..21347610hypothetical protein
LOC_Os03g38540Os.34624.2.S1_s_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38540Os.34624.1.S1_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed
LOC_Os03g38600OsAffx.25418.1.S1_at11/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38600Os.50423.1.S1_x_at2/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51675.1.S1_at--494--3871Chr03:21364150..21364174 (25 bp)
CTGATATCAGTTTTGCTGCACACAA
LOC_Os03g38580
Os.51675.1.S1_at--300--5691Chr03:21364058..21364082 (25 bp)
GACTTGGCTGCTCCTTCTGGAGGCA
LOC_Os03g38580
Os.51675.1.S1_at--1035--3311Chr03:21364035..21364059 (25 bp)
CACTCTCCGCATCATGAAGAACCTT
LOC_Os03g38580
Os.51675.1.S1_at--509--5371Chr03:21364020..21364044 (25 bp)
GAAGAACCTTCGTGTTTGTGGTGAT
LOC_Os03g38580
Os.51675.1.S1_at--315--8671Chr03:21364004..21364028 (25 bp)
TGTGGTGATTGTCATTGTGCGTACA
LOC_Os03g38580
Os.51675.1.S1_at--888--2191Chr03:21363982..21364006 (25 bp)
ACAAATACTTCTCCCTTGTTACAGG
LOC_Os03g38580
Os.51675.1.S1_at--411--3271Chr03:21363915..21363939 (25 bp)
CAACAGTGGTTTTTGTTCCTGTGGT
LOC_Os03g38580
Os.51675.1.S1_at--645--9471Chr03:21363862..21363886 (25 bp)
TCTGCAATTTCGCATCCTAGCAATG
NONE
Os.51675.1.S1_at--627--1371Chr03:21363832..21363856 (25 bp)
AGAGCTCTAATGACACCATATTTGT
NONE
Os.51675.1.S1_at--881--10111Chr03:21363802..21363826 (25 bp)
TATGTGTTGAGCTTTCACGCAAAAC
NONE
Os.51675.1.S1_at--62--6811Chr03:21363668..21363692 (25 bp)
GTTTTGCTACTTTCATTCGACATGT
NONE
Target Sequence 
CTGATATCAGTTTTGCTGCACACAATATACAAAGGGATAGAAAGGAAGAATCATTGTATTATCACTGTGAAAAATTGGCA
TTTGCTTTTGGGGACTTGGCTGCTCCTTCTGGAGGCACTCTCCGCATCATGAAGAACCTTCGTGTTTGTGGTGATTGTCA
TTGTGCGTACAAATACTTCTCCCTTGTTACAGGAAGAGAAATAATATTGAGAGACAATCAAAGGTTTCACCATTTCAACA
GTGGTTTTTGTTCCTGTGGTGATTACTGGTAATGGATCAATAAGCTATTCTGCAATTTCGCATCCTAGCAATGATTTAAG
AGCTCTAATGACACCATATTTGTTTAGGTATGTGTTGAGCTTTCACGCAAAACAAAATTTCCATTCATTACATAGGAGCA
CAATATACCTTTTTTTTTACCATGTTCAATGCATGTCACATAAAAATATTAATGAGTAGAGTTGTAAATGATATTCATGT
TGTTTTGCTACTTTCATTCGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis