Browse Element(s) Details


OsAffx.13235.1.S1_at

Description tigr:9631.m03704
TID=OsAffx.13235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3861011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed
LOC_Os03g38600OsAffx.25418.1.S1_at11/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38600Os.50423.1.S1_x_at2/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38640OsAffx.25420.1.S1_at11/113+21408175..21409215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13235.1.S1_at--841--8891Chr03:21383680..21383704 (25 bp)
TGAGAGTTCTCGAGCGCTTCAAGAC
LOC_Os03g38610
OsAffx.13235.1.S1_at--889--2751Chr03:21383660..21383684 (25 bp)
AAGACCTTGCCACAGCTGGACAAAT
LOC_Os03g38610
OsAffx.13235.1.S1_at--134--2811Chr03:21383630..21383654 (25 bp)
AAGATGACCGACCTGGAGGGCTTCA
LOC_Os03g38610
OsAffx.13235.1.S1_at--60--1091Chr03:21383614..21383638 (25 bp)
AGGGCTTCATCCAGGAGCGCATCAA
LOC_Os03g38610
OsAffx.13235.1.S1_at--722--1991Chr03:21383529..21383553 (25 bp)
ACTCCTCATTGAAGCTCTCGAAGGC
LOC_Os03g38610
OsAffx.13235.1.S1_at--436--8491Chr03:21383453..21383477 (25 bp)
TGGCTTGTAGATGCACGCCTCAACA
LOC_Os03g38610
OsAffx.13235.1.S1_at--1051--2991Chr03:21383423..21383447 (25 bp)
AATGATCAACTCCAGAAGCTCCACG
LOC_Os03g38610
OsAffx.13235.1.S1_at--326--3991Chr03:21383335..21383359 (25 bp)
CGGGCTACACTGTTGCGCAAGAGGC
LOC_Os03g38610
OsAffx.13235.1.S1_at--1132--4931Chr03:21383269..21383293 (25 bp)
GCATTGGCTCATTGGGCTATAGTTT
LOC_Os03g38610
OsAffx.13235.1.S1_at--300--7771Chr03:21383204..21383228 (25 bp)
GGTGACATGGTGCAACCTTTCAACA
LOC_Os03g38610
OsAffx.13235.1.S1_at--83--9711Chr03:21383185..21383209 (25 bp)
TCAACATTGGCGCAGGATCCTCATT
LOC_Os03g38610
Target Sequence 
TGAGAGTTCTCGAGCGCTTCAAGACCTTGCCACAGCTGGACAAATATAAGAAGATGACCGACCTGGAGGGCTTCATCCAG
GAGCGCATCAACAAGTTCCAAGAGCAGTTAGACAAGGTGAGGCGTGATGCCGATGAAAGTGAGACCAAGCTACTCCTCAT
TGAAGCTCTCGAAGGCCGCCGCCCAGGCCTTGAGGGGATCACCATTGAGCAACTTACCAGCCTTGGCTGGCTTGTAGATG
CACGCCTCAACATCGTCAATGATCAACTCCAGAAGCTCCACGAGCAGGGCCTCCTACCAGCGTCTATTTCACTGCCAACC
ATGGGGGTACTGCCTTACACCACGGCGGGCTACACTGTTGCGCAAGAGGCACCAATCCAGAGGGGGGGATGGCTCATGGG
TGTTGTAAGGGGCATTGGCTCATTGGGCTATAGTTTGTTCAGAGGTAGCGGCAGAAGCAACACTGCTGGACCCAGTGGTG
ACATGGTGCAACCTTTCAACATTGGCGCAGGATCCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis