Browse Element(s) Details


OsAffx.25420.1.S1_at

Description tigr:9631.m03707
TID=OsAffx.25420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3864011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38640OsAffx.25420.1.S1_at11/113+21408175..21409215expressed protein
LOC_Os03g38650OsAffx.13237.1.S1_at11/113+21414694..21416201hypothetical protein
LOC_Os03g38660NANA3+21419323..21419778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38670NANA3+21421808..21422323hypothetical protein
LOC_Os03g38680OsAffx.25421.1.S1_at11/113+21429102..21430207hypothetical protein
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25420.1.S1_at--454--1491Chr03:21408671..21408695 (25 bp)
AGCAGCCCGCGGTGGTGTCCGGCAT
LOC_Os03g38640
OsAffx.25420.1.S1_at--168--9171Chr03:21408700..21408724 (25 bp)
TGCCGAAGCGGCAGGTTCTCTCCGT
LOC_Os03g38640
OsAffx.25420.1.S1_at--502--1011Chr03:21408712..21408736 (25 bp)
AGGTTCTCTCCGTCCGCGGCGAGGA
LOC_Os03g38640
OsAffx.25420.1.S1_at--882--5991Chr03:21408745..21408769 (25 bp)
GAGAGCGCCGTCAGGCGAACCAACT
LOC_Os03g38640
OsAffx.25420.1.S1_at--505--871Chr03:21408757..21408781 (25 bp)
AGGCGAACCAACTCCGCCAGGGAGG
LOC_Os03g38640
OsAffx.25420.1.S1_at--692--2531Chr03:21408766..21408790 (25 bp)
AACTCCGCCAGGGAGGCCGACATGA
LOC_Os03g38640
OsAffx.25420.1.S1_at--166--6231Chr03:21408778..21408802 (25 bp)
GAGGCCGACATGATGCTGCCGCATT
LOC_Os03g38640
OsAffx.25420.1.S1_at--355--8011Chr03:21408862..21408886 (25 bp)
GGAGGCGCAGCCAAACGGGACCCCG
LOC_Os03g38640
OsAffx.25420.1.S1_at--116--5171Chr03:21409001..21409025 (25 bp)
GCAAGACCGCGAAGGACGACACCAC
LOC_Os03g38640
OsAffx.25420.1.S1_at--1135--2871Chr03:21409124..21409148 (25 bp)
AAGGGCACGAGCAAGAGAAGCAGAC
LOC_Os03g38640
OsAffx.25420.1.S1_at--1059--1071Chr03:21409154..21409178 (25 bp)
AGGGCGGCGCGCTGGGACCGATCAA
LOC_Os03g38640
Target Sequence 
AGCAGCCCGCGGTGGTGTCCGGCATCGGGTGCCGAAGCGGCAGGTTCTCTCCGTCCGCGGCGAGGAGGGCCGCCGAGAGC
GCCGTCAGGCGAACCAACTCCGCCAGGGAGGCCGACATGATGCTGCCGCATTCTTCCCGGACGCCGGCAGCCGCCAAGCG
GTCCCTCAACGGCAATGGCGGCGCCTACGGAGGAGGCGCAGCCAAACGGGACCCCGGCGAGCGATCCGGGCGGCGGCCGG
ACTCCCCAACATCCAAGCACATCCCGCCCGCCTCGCCGGCAGCGAACGGCGCCATCTCCCGGCAGCAGAGCCTCAACGGC
GGCGCCACGCGCAAGACCGCGAAGGACGACACCACCCTCGAGCAAACCAAGCCGCAATGCCACGGCGGCGGCGGCGGTGG
CCGGTCACCGGAAGAGGGAAGAGACGGCTCCGACGAGTCGGCATTGGAGGAGGAAGGGCACGAGCAAGAGAAGCAGACGG
CGGAGGGCGGCGCGCTGGGACCGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis