Browse Element(s) Details


OsAffx.13236.1.S1_x_at

Description tigr:9631.m03705
TID=OsAffx.13236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3862011/11hypothetical protein
LOC_Os09g067601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed
LOC_Os03g38600OsAffx.25418.1.S1_at11/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38600Os.50423.1.S1_x_at2/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38640OsAffx.25420.1.S1_at11/113+21408175..21409215expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13236.1.S1_x_at--69--5011Chr03:21388091..21388115 (25 bp)
GCATGTGCGAGAGAGCGGCGGGAAA
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--514--4011Chr03:21388152..21388176 (25 bp)
CGTCGGCGAGATGGCAACGGGAGGC
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--330--4111Chr03:21388201..21388225 (25 bp)
CGAAGACGACGATGCTCCGGTGACG
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--800--1391Chr03:21388204..21388228 (25 bp)
AGACGACGATGCTCCGGTGACGGGC
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--319--5051Chr03:21388252..21388276 (25 bp)
GCAGCAGCTGCATCCTAGGATGGGA
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--1162--8371Chr03:21388302..21388326 (25 bp)
GGCGACATGGCCTGCCGGAGCGGAA
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--87--7591Chr03:21388340..21388364 (25 bp)
GGGCTCACCGGCACACGGGAAAACG
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--875--5113Chr03:21388350..21388374 (25 bp)
GCACACGGGAAAACGGACGTCCAGT
LOC_Os03g38620
OsAffx.13236.1.S1_x_at--1068--8097Chr09:3225573..3225596 (24 bp)
GGACGTCCAGTGAGTTTCCGGCGAT
LOC_Os09g06760
OsAffx.13236.1.S1_x_at--360--10592Chr06:15205511..15205530 (20 bp)
TTCTCCTCGTCCTTGTGGAGCAGAG
NONE
OsAffx.13236.1.S1_x_at--289--5017Chr10:11101478..11101498 (21 bp)
GCATGGACCGAAGCGGCGTTGCGAC
NONE
Target Sequence 
GCATGTGCGAGAGAGCGGCGGGAAAGGGGAGGGGGAGTAGCACACGGCGGAAGGAGGTGGCCGTCGGCGAGATGGCAACG
GGAGGCGGCGACGGCGGAGCTCGGGGCGGACGAAGACGACGATGCTCCGGTGACGGGCGGCGCTCGGGAAGAGGCGGACG
AGCAGCAGCTGCATCCTAGGATGGGAGGGGAGGTGTTAGGGAGGACGGGGCGGCGACATGGCCTGCCGGAGCGGAAAGGA
AGGGAGGAAGGGCTCACCGGCACACGGGAAAACGGACGTCCAGTGAGTTTCCGGCGATGGGAAGAGGTGGCCGAGGTTCT
CCTCGTCCTTGTGGAGCAGAGGGAGGTGACGGCGTGGGTCGGCATGGACCGAAGCGGCGTTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13236.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis