Browse Element(s) Details


Os.50423.1.S1_x_at

Description gb:AK121148.1
DB_XREF= gi:37990771
TID=Os.50423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078G19, full insert sequence.
FL= gb:AK121148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g386002/11Secretory carrier-associated membrane protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified
LOC_Os03g38570NANA3+21355861..21362033retrotransposon protein, putative, unclassified
LOC_Os03g38580Os.51675.1.S1_at7/113+21363903..21365867pentatricopeptide, putative, expressed
LOC_Os03g38590Os.6073.1.S1_at11/113+21370785..21375180Secretory carrier-associated membrane protein, putative, expressed
LOC_Os03g38600OsAffx.25418.1.S1_at11/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38600Os.50423.1.S1_x_at2/113+21375579..21380097Secretory carrier-associated membrane protein, putative
LOC_Os03g38610OsAffx.13235.1.S1_at11/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38610OsAffx.26219.1.S1_x_at1/113+21383151..21383900SRF-type transcription factor family protein
LOC_Os03g38620OsAffx.13236.1.S1_x_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.13236.1.S1_at11/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.49936.2.A1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.15708.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.19857.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620OsAffx.18103.1.S1_x_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.52238.1.S1_at1/113+21384891..21388624hypothetical protein
LOC_Os03g38620Os.33601.3.S1_x_at1/113+21384891..21388624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50423.1.S1_x_at--31--6891Chr03:21375632..21375656 (25 bp)
GTATATTGGTATTTCCGCGGGAAAG
LOC_Os03g38600
Os.50423.1.S1_x_at--820--4071Chr03:21375597..21375621 (25 bp)
CGAGATGAGGCCTGATGCTGCAGCA
LOC_Os03g38600
Os.50423.1.S1_x_at--1142--5051Chr03:21375578..21375602 (25 bp)
GCAGCAGGCGGCTCACGGTTCTGAC
NONE
Os.50423.1.S1_x_at--868--8311Chr03:21375569..21375593 (25 bp)
GGCTCACGGTTCTGACGACATAGCA
NONE
Os.50423.1.S1_x_at--953--5651Chr03:21375553..21375577 (25 bp)
GACATAGCAACCCTGAACCTGAAGC
NONE
Os.50423.1.S1_x_at--401--5411Chr03:21375533..21375557 (25 bp)
GAAGCTGCAGCTAAGGATAGACAAG
NONE
Os.50423.1.S1_x_at--1146--4831Chr03:21375524..21375548 (25 bp)
GCTAAGGATAGACAAGATCAAGCTT
NONE
Os.50423.1.S1_x_at--934--6451Chr03:21375509..21375533 (25 bp)
GATCAAGCTTGAAATTGTTGTGAAG
NONE
Os.50423.1.S1_x_at--374--5311Chr03:21375488..21375512 (25 bp)
GAAGTTGTAAGTGGATTTGTTGGAT
NONE
Os.50423.1.S1_x_at--378--7931Chr03:21375476..21375500 (25 bp)
GGATTTGTTGGATTGTTGTGGACTT
NONE
Os.50423.1.S1_x_at--506--2071Chr03:21375455..21375479 (25 bp)
ACTTGTGGTTGATGGAAGTGCAAGA
NONE
Target Sequence 
GTATATTGGTATTTCCGCGGGAAAGGGAAGGAGGCCGAGATGAGGCCTGATGCTGCAGCAGGCGGCTCACGGTTCTGACG
ACATAGCAACCCTGAACCTGAAGCTGCAGCTAAGGATAGACAAGATCAAGCTTGAAATTGTTGTGAAGTTGTAAGTGGAT
TTGTTGGATTGTTGTGGACTTGTGGTTGATGGAAGTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50423.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis