Browse Element(s) Details


OsAffx.19857.1.S1_at

Description tigr:9640.m02661
TID=OsAffx.19857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2768011/11hypothetical protein
LOC_Os03g386201/11hypothetical protein
LOC_Os04g063601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g445501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27670OsAffx.31904.1.S1_at11/1112+16301342..16302175hypothetical protein
LOC_Os12g27680OsAffx.19857.1.S1_at11/1112+16305719..16306579hypothetical protein
LOC_Os12g27690OsAffx.7718.1.S1_at11/1112+16327531..16329272hypothetical protein
LOC_Os12g27700NANA12+16330720..16333695retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19857.1.S1_at--80--552Chr12:16306495..16306519 (25 bp)
ATCCCATCAACTAAGTTACCCAAGG
LOC_Os12g27680
OsAffx.19857.1.S1_at--695--45566Chr12:27109513..27109536 (24 bp)
GTTACCCAAGGTTGACAAAGGACAG
NONE
OsAffx.19857.1.S1_at--1015--5211Chr12:16306155..16306179 (25 bp)
GAATTTTGCAAGTTGAGTTGCTCAA
LOC_Os12g27680
OsAffx.19857.1.S1_at--396--10191Chr12:16306041..16306065 (25 bp)
TATTATTTATTTATGGCGTCGACAA
LOC_Os12g27680
OsAffx.19857.1.S1_at--1116--3352Chr12:16306008..16306032 (25 bp)
CACCCGTCGGTGACTCATGGGAGGT
LOC_Os12g27680
OsAffx.19857.1.S1_at--1001--8531Chr12:16305973..16305997 (25 bp)
TGGACCAAGTCCAAGCGCGCATCGT
LOC_Os12g27680
OsAffx.19857.1.S1_at--240--8511Chr12:16305881..16305905 (25 bp)
TGGCACCGATGCGAGATGGCACCAC
LOC_Os12g27680
OsAffx.19857.1.S1_at--128--6031Chr12:16305869..16305893 (25 bp)
GAGATGGCACCACGACAGCCACGTG
LOC_Os12g27680
OsAffx.19857.1.S1_at--122--2171Chr12:16305855..16305879 (25 bp)
ACAGCCACGTGGATGGCCGGGATTC
LOC_Os12g27680
OsAffx.19857.1.S1_at--941--1791Chr12:16305830..16305854 (25 bp)
ACCCGAGGGTGAATCCAACCGTGTG
LOC_Os12g27680
OsAffx.19857.1.S1_at--256--10111Chr12:16305782..16305806 (25 bp)
TATGGCTCAGGCTGGCCCAAGCGAG
LOC_Os12g27680
Target Sequence 
ATCCCATCAACTAAGTTACCCAAGGTTGACAAAGGACAGACATCAAGTAAATATGACACAAGCAAGCAGATAGATGAATT
TTGCAAGTTGAGTTGCTCAATTTGGAGTTCGAATGAATTTATTATGAATAATTATTATCGAATTATTGTGCAATTATTAT
TTATTTATGGCGTCGACAAGCGGGCCCCACCCGTCGGTGACTCATGGGAGGTAGACGTACGGTGGACCAAGTCCAAGCGC
GCATCGTCCGTGGGTGCACCACGTGGTGGCCACGGCGGACAAGCGTCGGAGGTGGCAAGGACGTGGCGCCGAGGTGGCAC
CGATGCGAGATGGCACCACGACAGCCACGTGGATGGCCGGGATTCACCCGAGGGTGAATCCAACCGTGTGGGAGTGGGCG
GCCGAGGCGCGGGTATGGCTCAGGCTGGCCCAAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis