Browse Element(s) Details


OsAffx.31904.1.S1_at

Description tigr:9640.m02660
TID=OsAffx.31904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27650OsAffx.19856.1.S1_at11/1112+16275331..16277177hypothetical protein
LOC_Os12g27670OsAffx.31904.1.S1_at11/1112+16301342..16302175hypothetical protein
LOC_Os12g27680OsAffx.19857.1.S1_at11/1112+16305719..16306579hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31904.1.S1_at--159--5091Chr12:16301912..16301936 (25 bp)
GCACCGAGGGAAATGGCGCCCGGAA
LOC_Os12g27670
OsAffx.31904.1.S1_at--144--2691Chr12:16301889..16301913 (25 bp)
AAGCGGCAAGGATCGGCAGAGCTCA
LOC_Os12g27670
OsAffx.31904.1.S1_at--578--491Chr12:16301878..16301902 (25 bp)
ATCGGCAGAGCTCACCTTGGACGGA
LOC_Os12g27670
OsAffx.31904.1.S1_at--645--3412Chr01:17370305..17370326 (22 bp)
CAGAGCTCACCTTGGACGGAGGGAA
NONE
OsAffx.31904.1.S1_at--889--1071Chr12:16301854..16301878 (25 bp)
AGGGAAGCGGTCTCCCGCGATGGTT
LOC_Os12g27670
OsAffx.31904.1.S1_at--645--791Chr12:16301759..16301783 (25 bp)
ATGTGGACATGAGAGGCGGCGCGGC
LOC_Os12g27670
OsAffx.31904.1.S1_at--887--7711Chr12:16301710..16301734 (25 bp)
GGTGGCTCGGGTGCTCGGTGCGGAG
LOC_Os12g27670
OsAffx.31904.1.S1_at--396--7711Chr12:16301578..16301602 (25 bp)
GGTGGCGTGCGTCCAGAGGTCGATG
LOC_Os12g27670
OsAffx.31904.1.S1_at--79--7991Chr12:16301463..16301487 (25 bp)
GGATGCTTTTCATGGGCGCAAGAGT
LOC_Os12g27670
OsAffx.31904.1.S1_at--1048--10531Chr12:16301455..16301479 (25 bp)
TTCATGGGCGCAAGAGTGTGGAATC
LOC_Os12g27670
OsAffx.31904.1.S1_at--48--7351Chr12:16301422..16301446 (25 bp)
GTGAGACGGAATCGGCCGACGACGT
LOC_Os12g27670
Target Sequence 
GCACCGAGGGAAATGGCGCCCGGAAGCGGCAAGGATCGGCAGAGCTCACCTTGGACGGAGGGAAGCGGTCTCCCGCGATG
GTTCGCGAGGAGGGAGGGGTGGACGGGCTGCGCACGGTGGCTGCGGTGCTGGGGAAGGCGACGACGCAGCGCGATGTGGA
CATGAGAGGCGGCGCGGCGTGGCTGGAGGTGGCGATGGTGGAGGTGGCTCGGGTGCTCGGTGCGGAGGTGGTTCCGGCAG
GGATACGGGGAGAGGTGGAGCGGATGCCGAGGTGTGGCTCGGCGTGGCGGAGACAATGGTGGCGGTGGCGTGGCTTGGCG
GTGACCCTAGCGGCGGTGGCGTGCGTCCAGAGGTCGATGGCGAGCGACGACGCTTGTGCTCGCGTGGGGAGAACGGGAGA
GTGCGGGGGAAAGCCGGGCGGGGAGGGGAAACGAGAGAGCATGGTCGGGGGATGCTTTTCATGGGCGCAAGAGTGTGGAA
TCGAGGTCGGGTGAGACGGAATCGGCCGACGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis