Browse Element(s) Details


OsAffx.19856.1.S1_at

Description tigr:9640.m02659
TID=OsAffx.19856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2765011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27619NANA12+16251309..16251561NA
LOC_Os12g27630Os.47463.1.S1_x_at4/1112+16260011..16263680transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27630Os.14491.2.S1_x_at4/1112+16260011..16263680transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27640Os.52536.1.S1_at5/1112+16266729..16272775transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27650OsAffx.19856.1.S1_at11/1112+16275331..16277177hypothetical protein
LOC_Os12g27670OsAffx.31904.1.S1_at11/1112+16301342..16302175hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19856.1.S1_at--411--10352Chr12:16276773..16276797 (25 bp)
TTTTCACATCAACAACCACCTAGGA
LOC_Os12g27650
OsAffx.19856.1.S1_at--536--1711Chr12:16276787..16276811 (25 bp)
ACCACCTAGGAGTGCTTACTCATGC
LOC_Os12g27650
OsAffx.19856.1.S1_at--551--7831Chr12:16276828..16276852 (25 bp)
GGTACAGGTTGATCTGCAGAGTCAT
LOC_Os12g27650
OsAffx.19856.1.S1_at--961--6091Chr12:16276846..16276870 (25 bp)
GAGTCATAGGGTGCGAGAACTTCTC
LOC_Os12g27650
OsAffx.19856.1.S1_at--1028--5471Chr12:16276862..16276886 (25 bp)
GAACTTCTCAATTCTTGTGGATGAC
LOC_Os12g27650
OsAffx.19856.1.S1_at--791--5651Chr12:16276884..16276908 (25 bp)
GACATCAAACTAGTGCTGGAAGCCG
LOC_Os12g27650
OsAffx.19856.1.S1_at--886--2671Chr12:16276977..16277001 (25 bp)
AAGCGGGCGGCTTTCAAGAATATAG
LOC_Os12g27650
OsAffx.19856.1.S1_at--542--5511Chr12:16277012..16277036 (25 bp)
GAAAATCATTAAGTCCAGGCTGGTC
LOC_Os12g27650
OsAffx.19856.1.S1_at--33--9911Chr12:16277060..16277084 (25 bp)
TACTCCGAAGCCATATGGGCTCTTC
LOC_Os12g27650
OsAffx.19856.1.S1_at--597--10651Chr12:16277082..16277106 (25 bp)
TTCCCATTCATCACGCCAAGAGTGT
LOC_Os12g27650
OsAffx.19856.1.S1_at--203--5371Chr12:16277123..16277147 (25 bp)
GAAGAAGTCGACACCTAAATCCCGG
LOC_Os12g27650
Target Sequence 
TTTTCACATCAACAACCACCTAGGAGTGCTTACTCATGCCCCCAAGGTTTGGAGAGGTACAGGTTGATCTGCAGAGTCAT
AGGGTGCGAGAACTTCTCAATTCTTGTGGATGACATCAAACTAGTGCTGGAAGCCGAGAAGAACACTACTTGGCTAAAGT
TCAAGGAGAGCTTCGGCTATCCTGCAGCCGACGAGGGCAGGCTCAAGCGGGCGGCTTTCAAGAATATAGGCAATTATTGG
AAAATCATTAAGTCCAGGCTGGTCGCCGAGTACGTCCTCAACCCGGCTACTCCGAAGCCATATGGGCTCTTCCCATTCAT
CACGCCAAGAGTGTGGGAGCAGTTCTACGAGAAGAAGTCGACACCTAAATCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis