Browse Element(s) Details


OsAffx.18103.1.S1_x_at

Description gb:NM_194663.1
DB_XREF= gi:37530685
TID=OsAffx.18103.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0049K09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0337011/11hypothetical protein
LOC_Os03g445501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g386201/11hypothetical protein
LOC_Os04g417201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03330OsAffx.10637.1.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.3.S1_s_at11/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.4.S1_s_at9/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03330OsAffx.10637.2.S1_at1/1110+1391901..1395587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_at11/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_x_at10/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03350NANA10+1406992..1407921retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03360Os.46736.1.S1_at1/1110+1415290..1416555Transferase family protein
LOC_Os10g03370OsAffx.18103.1.S1_x_at11/1110+1420420..1420842hypothetical protein
LOC_Os10g03380OsAffx.18104.1.S1_at10/1110+1422417..1423475hypothetical protein
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18103.1.S1_x_at--418--3998Chr10:1420460..1420484 (25 bp)
CGTGGCGCCACGAGGGCACCTTCGT
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--452--7611Chr10:1420486..1420510 (25 bp)
GGGCAACACGTGGACGACCCAGATC
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--115--5151Chr10:1420488..1420512 (25 bp)
GCAACACGTGGACGACCCAGATCGG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--719--8111Chr10:1420497..1420521 (25 bp)
GGACGACCCAGATCGGCCAGAGCAG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--423--3431Chr10:1420505..1420529 (25 bp)
CAGATCGGCCAGAGCAGCCGATCGG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--111--4371Chr10:1420534..1420558 (25 bp)
CCACGGGCAAGTGCGGCACGGCAAG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--870--3411Chr10:1420600..1420624 (25 bp)
CAGAAGGCGGCGGCGCTCAGCCATA
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--347--3751Chr10:1420615..1420639 (25 bp)
CTCAGCCATATGGTCGCCGGTGGTG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--815--8651Chr10:1420638..1420662 (25 bp)
TGGGCGGCGGCGACACACACGGGAG
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--477--3271Chr10:1420712..1420736 (25 bp)
CAAAGACGGGAAGGCGACTGACGAC
LOC_Os10g03370
OsAffx.18103.1.S1_x_at--318--1973Chr10:1420728..1420752 (25 bp)
ACTGACGACGAGGATTGGCGGCGGC
LOC_Os10g03370
Target Sequence 
CGTGGCGCCACGAGGGCACCTTCGTGGGGCAACACGTGGACGACCCAGATCGGCCAGAGCAGCCGATCGGGCGGCCACGG
GCAAGTGCGGCACGGCAAGGGGCCAGGTGGCCAGGGGCGAGCAGGGCAGCGGCAGCCGGCCAGAAGGCGGCGGCGCTCAG
CCATATGGTCGCCGGTGGTGGGCGGCGGCGACACACACGGGAGGCGGCGTGGAAGGGAGAGGGGGCTCACCAAGAGGACG
GGGATGGTGAGGCAAAGACGGGAAGGCGACTGACGACGAGGATTGGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis