Browse Element(s) Details


OsAffx.18104.1.S1_at

Description tigr:9638.m00245
TID=OsAffx.18104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0338010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03340OsAffx.32056.1.S1_at11/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03340OsAffx.32056.1.S1_x_at10/1110+1397173..1400517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03350NANA10+1406992..1407921retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03360Os.46736.1.S1_at1/1110+1415290..1416555Transferase family protein
LOC_Os10g03370OsAffx.18103.1.S1_x_at11/1110+1420420..1420842hypothetical protein
LOC_Os10g03380OsAffx.18104.1.S1_at10/1110+1422417..1423475hypothetical protein
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18104.1.S1_at--199--10271NONE
TTATGACGGTTAGAAAGGAGAAGGC
NONE
OsAffx.18104.1.S1_at--1031--8251Chr10:1422483..1422507 (25 bp)
GGCAGCGGGAGAGCTTCTGGACTAT
LOC_Os10g03380
OsAffx.18104.1.S1_at--267--3991Chr10:1422478..1422502 (25 bp)
CGGGAGAGCTTCTGGACTATGGCCC
LOC_Os10g03380
OsAffx.18104.1.S1_at--214--7651Chr10:1422477..1422501 (25 bp)
GGGAGAGCTTCTGGACTATGGCCCA
LOC_Os10g03380
OsAffx.18104.1.S1_at--700--8051Chr10:1422476..1422500 (25 bp)
GGAGAGCTTCTGGACTATGGCCCAG
LOC_Os10g03380
OsAffx.18104.1.S1_at--359--6011Chr10:1422475..1422499 (25 bp)
GAGAGCTTCTGGACTATGGCCCAGA
LOC_Os10g03380
OsAffx.18104.1.S1_at--1033--1351Chr10:1422474..1422498 (25 bp)
AGAGCTTCTGGACTATGGCCCAGAA
LOC_Os10g03380
OsAffx.18104.1.S1_at--970--5911Chr10:1422473..1422497 (25 bp)
GAGCTTCTGGACTATGGCCCAGAAG
LOC_Os10g03380
OsAffx.18104.1.S1_at--670--4911Chr10:1422471..1422495 (25 bp)
GCTTCTGGACTATGGCCCAGAAGGT
LOC_Os10g03380
OsAffx.18104.1.S1_at--331--9451Chr10:1422468..1422492 (25 bp)
TCTGGACTATGGCCCAGAAGGTCCA
LOC_Os10g03380
OsAffx.18104.1.S1_at--640--3411Chr10:1422454..1422478 (25 bp)
CAGAAGGTCCAGAAGCTCCCCCAAA
LOC_Os10g03380
Target Sequence 
TTATGACGGTTAGAAAGGAGAAGGCAGCGGGAGAGCTTCTGGACTATGGCCCAGAAGGTCCAGAAGCTCCCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis