Browse Element(s) Details


Os.46736.1.S1_at

Description gb:NM_194664.1
DB_XREF= gi:37530687
TID=Os.46736.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46736 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative O-deacetylbaccatin III-10-0-acetyltransferase (OSJNBa0049K09.22), mRNA.
PROD=putative O-deacetylbaccatinIII-10-0-acetyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0339011/11Transferase family protein, expressed
LOC_Os10g033601/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03350NANA10+1406992..1407921retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03360Os.46736.1.S1_at1/1110+1415290..1416555Transferase family protein
LOC_Os10g03370OsAffx.18103.1.S1_x_at11/1110+1420420..1420842hypothetical protein
LOC_Os10g03380OsAffx.18104.1.S1_at10/1110+1422417..1423475hypothetical protein
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein
LOC_Os10g03430OsAffx.20777.1.S1_at10/1110+1448842..1450087hypothetical protein
LOC_Os10g03430Os.6062.1.S1_at2/1110+1448842..1450087hypothetical protein
LOC_Os10g03440OsAffx.18105.1.S1_at11/1110+1452880..1454262U-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46736.1.S1_at--761--2151Chr10:1428866..1428890 (25 bp)
ACAGCATCACCATCCCTGCGAGGGT
LOC_Os10g03390
Os.46736.1.S1_at--869--9311Chr10:1428878..1428902 (25 bp)
TCCCTGCGAGGGTGATCAACGGCGT
LOC_Os10g03390
Os.46736.1.S1_at--166--7351Chr10:1428889..1428913 (25 bp)
GTGATCAACGGCGTCCGAGGTCCGA
LOC_Os10g03390
Os.46736.1.S1_at--650--3972Chr10:1428970..1428994 (25 bp)
CGCGTGGTGATGTCCGACCCCGACG
LOC_Os10g03390
Os.46736.1.S1_at--965--371Chr10:1429012..1429036 (25 bp)
ATCACGGTGAACTCTCGCAAGTACG
LOC_Os10g03390
Os.46736.1.S1_at--482--2011Chr10:1429022..1429046 (25 bp)
ACTCTCGCAAGTACGTGGGCGTCAA
LOC_Os10g03390
Os.46736.1.S1_at--785--351Chr10:1429141..1429165 (25 bp)
ATAAGGCGCGCTAAGGAGGAGATAC
LOC_Os10g03390
Os.46736.1.S1_at--786--3831Chr10:1429237..1429261 (25 bp)
CTGCTGGTGACGTGCTGGCGAAACA
LOC_Os10g03390
Os.46736.1.S1_at--1150--3991Chr10:1429247..1429271 (25 bp)
CGTGCTGGCGAAACATCGGCTTCGA
LOC_Os10g03390
Os.46736.1.S1_at--219--7311Chr10:1429344..1429368 (25 bp)
GTGCGTGGTTTGTCTGCCATGGCAA
LOC_Os10g03390
Os.46736.1.S1_at--450--9131Chr10:1429394..1429418 (25 bp)
TGCTGTCCGGCTGTGTAACGCCTCA
LOC_Os10g03390
Target Sequence 
ACAGCATCACCATCCCTGCGAGGGTGATCAACGGCGTCCGAGGTCCGACTCCGACGTGCACCGTGTTCGAGGCGGTGGCG
GCCGTGATGTGGCGCTGCCGCACCCGCGTGGTGATGTCCGACCCCGACGCCCCCACCGTGCTCGCCATCACGGTGAACTC
TCGCAAGTACGTGGGCGTCAAGGACGGGTACTACGGCAACTGCGCCACCATGCAGATGGCCGTGGCGAGGAGCGGCGTGG
TGGCGGACGGCGATATGATGGAGGTGGTGAGGACGATAAGGCGCGCTAAGGAGGAGATACCGGAGCGGTTGAAGAAGGGA
GACGCCATCGCCGAGCTCAGCAAGGGGCAGCTGAGTGGGTACGAGAGCGTGCTGCTGGTGACGTGCTGGCGAAACATCGG
CTTCGAGGCGGTGGATTTCGGCGGCGGGAGGACGGCGAGGGTGATGACGACGTACGAGCAGAGTGGGGTGCGGCCGCTGT
GCGTGGTTTGTCTGCCATGGCAAGGGGAGGAAGATGAAGGAGCCAGGGTGCTGTCCGGCTGTGTAACGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis