Browse Element(s) Details


OsAffx.12171.1.S1_at

Description tigr:9638.m00247
TID=OsAffx.12171.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CRALTRIO, N-terminus, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0340011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03350NANA10+1406992..1407921retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03360Os.46736.1.S1_at1/1110+1415290..1416555Transferase family protein
LOC_Os10g03370OsAffx.18103.1.S1_x_at11/1110+1420420..1420842hypothetical protein
LOC_Os10g03380OsAffx.18104.1.S1_at10/1110+1422417..1423475hypothetical protein
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein
LOC_Os10g03430OsAffx.20777.1.S1_at10/1110+1448842..1450087hypothetical protein
LOC_Os10g03430Os.6062.1.S1_at2/1110+1448842..1450087hypothetical protein
LOC_Os10g03440OsAffx.18105.1.S1_at11/1110+1452880..1454262U-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12171.1.S1_at--991--1951Chr10:1433248..1433272 (25 bp)
ACTGTCGCCTGTTTGTGAGGAACTT
LOC_Os10g03400
OsAffx.12171.1.S1_at--381--8871Chr10:1433233..1433257 (25 bp)
TGAGGAACTTCCTCCTATGATGCTT
LOC_Os10g03400
OsAffx.12171.1.S1_at--140--5491Chr10:1433230..1433253 (24 bp)
GAACTTCCTCCTATGATGCTTCCTA
LOC_Os10g03400
OsAffx.12171.1.S1_at--864--9191Chr10:1432718..1432742 (25 bp)
TGCCATTTGCCAGAGTAAGGGATCA
LOC_Os10g03400
OsAffx.12171.1.S1_at--1022--10671Chr10:1432712..1432736 (25 bp)
TTGCCAGAGTAAGGGATCACGAGAT
LOC_Os10g03400
OsAffx.12171.1.S1_at--375--6451Chr10:1432698..1432722 (25 bp)
GATCACGAGATGAGAATGTCGCAAT
LOC_Os10g03400
OsAffx.12171.1.S1_at--519--771Chr10:1432597..1432707 (25 bp)
ATGTCGCAATAACCAAAGCCATTGT
LOC_Os10g03400
OsAffx.12171.1.S1_at--303--5131Chr10:1432424..1432448 (25 bp)
GCACAACAGCTATCCAAGATATCAA
LOC_Os10g03400
OsAffx.12171.1.S1_at--145--5231Chr10:1432379..1432403 (25 bp)
GAATATGCTTCTTCTACAAAGCGCC
LOC_Os10g03400
OsAffx.12171.1.S1_at--305--10571Chr10:1432371..1432395 (25 bp)
TTCTTCTACAAAGCGCCTATCTGAT
LOC_Os10g03400
OsAffx.12171.1.S1_at--585--2671Chr10:1432361..1432385 (25 bp)
AAGCGCCTATCTGATATCGAGGAGA
LOC_Os10g03400
Target Sequence 
ACTGTCGCCTGTTTGTGAGGAACTTCCTCCTATGATGCTTCCTACCCCAGGATCACCTTATTCTTGTGATGTTCCAATGG
TAGAGAAGGCCATAGATGCCATTTGCCAGAGTAAGGGATCACGAGATGAGAATGTCGCAATAACCAAAGCCATTGTAAAT
GCCTCTAACGGATCCAACCCTCCACTCTTTGGGGGTGTCATGGCTCTTGTCATGAGCATTGCAACAATGCTCCGTGTTAG
CCGCAACATGCCAAAGAAGGTACTTGGTGCTACCCTTGGGGCACAAAGTACATCCAAAATCCAAGCACAACAGCTATCCA
AGATATCAATGGAGGCTGTGTCAGCAGCTGAATATGCTTCTTCTACAAAGCGCCTATCTGATATCGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis