Browse Element(s) Details


OsAffx.17693.1.S1_at

Description tigr:9637.m01164
TID=OsAffx.17693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1456010/11hypothetical protein
LOC_Os03g386899/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14540Os.25400.1.S1_at11/119+8602013..8608483Protein phosphatase 2C containing protein, expressed
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein
LOC_Os09g14560OsAffx.17693.1.S1_at10/119+8622666..8625179hypothetical protein
LOC_Os09g14570OsAffx.17694.1.S1_x_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14570OsAffx.17694.1.S1_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14580OsAffx.25423.2.S1_x_at10/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14580Os.43946.3.S1_x_at7/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14590OsAffx.6272.1.S1_at11/119+8635423..8640334Proteasome maturation factor UMP1 family protein
LOC_Os09g14600Os.11929.1.S1_at11/119+8643136..8645464peroxisomal membrane protein, putative, expressed
LOC_Os09g14610Os.50406.1.S1_x_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.2.S1_s_at11/119+8645682..8653883RNase3 domain containing protein, expressed
LOC_Os09g14610Os.28186.1.S1_s_at10/119+8645682..8653883RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17693.1.S1_at--356--2492Chr09:8625110..8625134 (25 bp)
AACAGTTCACCACAAGGCATCATGA
LOC_Os09g14560
OsAffx.17693.1.S1_at--783--6232Chr09:8623987..8624011 (25 bp)
GATGGCTGCCAGTATTTATAGTTTT
LOC_Os09g14560
OsAffx.17693.1.S1_at--914--2512Chr06:1637646..1637673 (23 bp)
AACTTGCTGGAACTTTTGACTGGGA
NONE
OsAffx.17693.1.S1_at--425--812Chr09:8623426..8623450 (25 bp)
ATGGGTTTCATCTATGCTGTCGATC
LOC_Os09g14560
OsAffx.17693.1.S1_at--430--4732Chr09:8623411..8623435 (25 bp)
GCTGTCGATCATTTGAACCTGTTGC
LOC_Os09g14560
OsAffx.17693.1.S1_at--317--2631NONE
AACCTGTTGCTTCGAGCGATGTGCA
NONE
OsAffx.17693.1.S1_at--759--7212Chr09:8622943..8622967 (25 bp)
GTCGAAGGATCCAACTGCCGTGGCA
LOC_Os09g14560
OsAffx.17693.1.S1_at--205--3992Chr09:8622925..8622949 (25 bp)
CGTGGCACCCGGGAAAGATTCTTCG
LOC_Os09g14560
OsAffx.17693.1.S1_at--1145--9832Chr09:8622886..8622910 (25 bp)
TAAAGGGAGCTGATCACCTAGCGAT
LOC_Os09g14560
OsAffx.17693.1.S1_at--1097--9712Chr09:8622785..8622809 (25 bp)
TCAACCTGCGATTCTTCCGCGATGT
LOC_Os09g14560
OsAffx.17693.1.S1_at--817--412Chr09:8622704..8622728 (25 bp)
ATCATCCTTGTTCCGGCGAACGACA
LOC_Os09g14560
Target Sequence 
AACAGTTCACCACAAGGCATCATGAAAATATATCTGTCTAGATTCATTAACATCAATATGAATGTGAAAAATGCTAGAAT
GACTTACATTGTGAAAAGGAGGGAGTACATAAATACCACAAGAGAATATGCATACACAATGAGGTTGGCGATGGCTGCCA
GTATTTATAGTTTTGGAGACAACTTGCTGGAACTTTTGACTGGGAAACCATCGGTTTCTATTTTGGAATCAATCACAAAT
GGGTTTCATCTATGCTGTCGATCATTTGAACCTGTTGCTTCGAGCGATGTGCACCCGCGTCGAAGGATCCAACTGCCGTG
GCACCCGGGAAAGATTCTTCGCCTTTGCCACCTCATAAAGGGAGCTGATCACCTAGCGATCAATTCAATTAATCAACTGA
TGAGCAGCAACCAAAGATCGATCGATCCCCAAAACCAACCAAACAAACAGACGATCTCAACCTGCGATTCTTCCGCGATG
TCGGTGAGGGGGCCGGACGGAGGCTGGGAGTGGACGGCGCGCCGGGCCGCCGCGGCCATCATCCTTGTTCCGGCGAACGA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis