Browse Element(s) Details


OsAffx.6271.1.S1_at

Description tigr:9637.m01163
TID=OsAffx.6271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 38450-35693
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1455011/11Ataxin-2 C-terminal region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14510Os.26699.1.S1_a_at11/119+8584970..8588947Peroxin-3 family protein, expressed
LOC_Os09g14520Os.24683.1.A1_s_at11/119+8589541..8591392integral membrane family protein, putative, expressed
LOC_Os09g14530OsAffx.27789.1.S1_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.3.S1_s_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.2.S1_x_at7/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14540Os.25400.1.S1_at11/119+8602013..8608483Protein phosphatase 2C containing protein, expressed
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein
LOC_Os09g14560OsAffx.17693.1.S1_at10/119+8622666..8625179hypothetical protein
LOC_Os09g14570OsAffx.17694.1.S1_x_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14570OsAffx.17694.1.S1_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14580OsAffx.25423.2.S1_x_at10/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14580Os.43946.3.S1_x_at7/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14590OsAffx.6272.1.S1_at11/119+8635423..8640334Proteasome maturation factor UMP1 family protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6271.1.S1_at--510--1271Chr09:8614485..8614509 (25 bp)
AGATCAGCCCCGTTTTCTTCTAGGG
LOC_Os09g14550
OsAffx.6271.1.S1_at--252--6591Chr09:8615412..8615436 (25 bp)
GATTGCCGCATCTGTGGAGATCACT
LOC_Os09g14550
OsAffx.6271.1.S1_at--301--1271Chr09:8615429..8615453 (25 bp)
AGATCACTCATCTGGCCTTAGGTTT
LOC_Os09g14550
OsAffx.6271.1.S1_at--324--8271Chr09:8615627..8615651 (25 bp)
GGCATTTGCCCTCTTAGGGTTTCAC
LOC_Os09g14550
OsAffx.6271.1.S1_at--262--10531Chr09:8615647..8615671 (25 bp)
TTCACCTTCCAAGACTGCAATCATG
LOC_Os09g14550
OsAffx.6271.1.S1_at--53--3071Chr09:8615665..8615689 (25 bp)
AATCATGCCTGTGAACCCTTCTTTT
LOC_Os09g14550
OsAffx.6271.1.S1_at--1022--2051Chr09:8615984..8616008 (25 bp)
ACTTCTGCGAGGAACACTTTGGTCA
LOC_Os09g14550
OsAffx.6271.1.S1_at--972--7831Chr09:8616286..8616306 (21 bp)
TGGTCAGGTTTTCCGCCTAAAACTG
LOC_Os09g14550
OsAffx.6271.1.S1_at--959--4351Chr09:8616326..8616350 (25 bp)
CCACCCGCATAGCTTTTATTGAGTT
LOC_Os09g14550
OsAffx.6271.1.S1_at--608--6252Chr09:8617024..8617048 (25 bp)
GATGGTGCTATTAACGCCCTGAACT
LOC_Os09g14550
OsAffx.6271.1.S1_at--923--4951Chr09:8617055..8617079 (25 bp)
GCATATTTGCAAGTGGCCAGCCTAT
LOC_Os09g14550
Target Sequence 
AGATCAGCCCCGTTTTCTTCTAGGGTGCGAAGGGCCCAGAAGGAAGAGTTTGTGAGAAGAACAATATTTGTCAGTGATAT
AGACCATACTGTTACTGAGGACATGTTAGCTGAACTGTTCGGGAGCTATTGCAGCGTGGTGGTGGATTGCCGCATCTGTG
GAGATCACTCATCTGGCCTTAGGTTTGCATTTATTGAATTTCAAGATGAGAGTGATGCTTATGCTGCATTGGATCTTGAT
GGGTATGTTCTTGGCATTTGCCCTCTTAGGGTTTCACCTTCCAAGACTGCAATCATGCCTGTGAACCCTTCTTTTCTTCC
TCAGGTCAATGTAACAGATTTGAAATACTTCTGCGAGGAACACTTTGGTCAGGTTTTCCGCCTAAAACTGTTAGGTGATG
ATGGTCACCCCACCCGCATAGCTTTTATTGAGTTTGCTGAGGTTGATGGTGCTATTAACGCCCTGAACTCCAGTGGCATA
TTTGCAAGTGGCCAGCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis