Browse Element(s) Details


Os.26699.1.S1_a_at

Description gb:AK071933.1
DB_XREF= gi:32981956
TID=Os.26699.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033059H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084C05, full insert sequence.
FL= gb:AK071933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1451011/11Peroxin-3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14480OsAffx.10091.1.S1_at1/119+8557251..8562773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14490OsAffx.17691.1.S1_at11/119+8563277..8571068NB-ARC domain containing protein, expressed
LOC_Os09g14500Os.45957.4.S1_x_at6/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14500Os.45957.3.S1_x_at2/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14510Os.26699.1.S1_a_at11/119+8584970..8588947Peroxin-3 family protein, expressed
LOC_Os09g14520Os.24683.1.A1_s_at11/119+8589541..8591392integral membrane family protein, putative, expressed
LOC_Os09g14530OsAffx.27789.1.S1_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.3.S1_s_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.2.S1_x_at7/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14540Os.25400.1.S1_at11/119+8602013..8608483Protein phosphatase 2C containing protein, expressed
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein

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Gene Ontology Classification
GO idTypeName
GO:0005777cellular_componentperoxisome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26699.1.S1_a_at--457--6591Chr09:8588389..8588413 (25 bp)
GATTGCCCTTAGCAAAGCTCTTGGC
LOC_Os09g14510
Os.26699.1.S1_a_at--964--6071Chr09:8588429..8588453 (25 bp)
GAGTTTGCCATTGCTCGAGGAGCCA
LOC_Os09g14510
Os.26699.1.S1_a_at--992--10331Chr09:8588506..8588530 (25 bp)
TTTACACTTTCCTCTACGCAAACAT
LOC_Os09g14510
Os.26699.1.S1_a_at--965--10731Chr09:8588614..8588638 (25 bp)
TTGAGCACTTTCTGAACTCCGGAAA
LOC_Os09g14510
Os.26699.1.S1_a_at--536--5371Chr09:8588652..8588676 (25 bp)
GAAGACTGATTTATGCTCCTTGCCC
LOC_Os09g14510
Os.26699.1.S1_a_at--147--10711Chr09:8588671..8588695 (25 bp)
TTGCCCCTATGTATGCTGGAGATGT
LOC_Os09g14510
Os.26699.1.S1_a_at--697--8051Chr09:8588688..8588712 (25 bp)
GGAGATGTCCAGTTGTCACTAACAC
LOC_Os09g14510
Os.26699.1.S1_a_at--167--5891Chr09:8588723..8588747 (25 bp)
GAGCGCAGTCCTTTCTTAATTCATT
LOC_Os09g14510
Os.26699.1.S1_a_at--129--3591Chr09:8588744..8588768 (25 bp)
CATTTCTCTGCTTGTGTGCTTCTAG
LOC_Os09g14510
Os.26699.1.S1_a_at--74--4911Chr09:8588761..8588785 (25 bp)
GCTTCTAGCTAGAACCAGCACTGTT
LOC_Os09g14510
Os.26699.1.S1_a_at--315--8791Chr09:8588877..8588901 (25 bp)
TGTTACTATTTCTTTGCTCCTTCAT
LOC_Os09g14510
Target Sequence 
GATTGCCCTTAGCAAAGCTCTTGGCCAAAGTAGCTCAACTGAGTTTGCCATTGCTCGAGGAGCCAGATAAGAACAAGCAC
ATTCAGATTATCCGAAGTATGCCTGAAGTGGAACTCTTTTACACTTTCCTCTACGCAAACATGCCACCAGAAACATAATG
AAGCACACTAATGTGGAATGCAATACATTGGTCCCGAATTTTGCCATTAGAACAAGTCTGATATTTTGAGCACTTTCTGA
ACTCCGGAAACAGAAGGCGGAGAGAAGACTGATTTATGCTCCTTGCCCCTATGTATGCTGGAGATGTCCAGTTGTCACTA
ACACGGATCTAACTGAGCGCAGTCCTTTCTTAATTCATTTCTCTGCTTGTGTGCTTCTAGCTAGAACCAGCACTGTTTCA
GCCCTTTTTTTATATATATTTTTGAGATCTTACTATGGAAATTGTACTTGACCAGGGTTTCAATGGTTTATGTAAAGTGT
GATATACATGTTACTATTTCTTTGCTCCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26699.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis