Browse Element(s) Details


OsAffx.17691.1.S1_at

Description tigr:9637.m01157
TID=OsAffx.17691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1449011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14450OsAffx.6270.1.S1_s_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14450OsAffx.6270.1.S1_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14460NANA9+8548608..8549698hypothetical protein
LOC_Os09g14470NANA9+8551277..8555712retrotransposon protein, putative, unclassified
LOC_Os09g14480OsAffx.10091.1.S1_at1/119+8557251..8562773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14490OsAffx.17691.1.S1_at11/119+8563277..8571068NB-ARC domain containing protein, expressed
LOC_Os09g14500Os.45957.4.S1_x_at6/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14500Os.45957.3.S1_x_at2/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14510Os.26699.1.S1_a_at11/119+8584970..8588947Peroxin-3 family protein, expressed
LOC_Os09g14520Os.24683.1.A1_s_at11/119+8589541..8591392integral membrane family protein, putative, expressed
LOC_Os09g14530OsAffx.27789.1.S1_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.3.S1_s_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.2.S1_x_at7/119+8593720..8596309hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17691.1.S1_at--610--1951Chr09:8570477..8570501 (25 bp)
ACTGGAGCTGTGCAAGTGCTACTAC
LOC_Os09g14490
OsAffx.17691.1.S1_at--1128--7311Chr09:8570492..8570516 (25 bp)
GTGCTACTACACTGATCATCTACCA
LOC_Os09g14490
OsAffx.17691.1.S1_at--890--9591Chr09:8570507..8570531 (25 bp)
TCATCTACCACCACTTGGACAATTG
LOC_Os09g14490
OsAffx.17691.1.S1_at--1141--4951Chr09:8570578..8570602 (25 bp)
GCATAGGGCCTGAGTTCTACGGCGA
LOC_Os09g14490
OsAffx.17691.1.S1_at--51--6231Chr09:8570607..8570631 (25 bp)
GAGGCCCCATTTCAGTGTCTTGAGA
LOC_Os09g14490
OsAffx.17691.1.S1_at--674--4851Chr09:8570672..8570696 (25 bp)
GCTACCTGAAAACCATCCACATTGT
LOC_Os09g14490
OsAffx.17691.1.S1_at--8--7971Chr09:8570782..8570806 (25 bp)
GGATCACCGTATCATCGTGCAGCAA
LOC_Os09g14490
OsAffx.17691.1.S1_at--501--5011Chr09:8570871..8570895 (25 bp)
GCAGGTCAGACTAACGTGCTTCCCT
LOC_Os09g14490
OsAffx.17691.1.S1_at--53--6191Chr09:8570934..8570958 (25 bp)
GAGGAGCCTCTGATATCGATGCTTC
LOC_Os09g14490
OsAffx.17691.1.S1_at--371--491Chr09:8570973..8570997 (25 bp)
ATCGGCTTCTCCTACTGGGAACAAA
LOC_Os09g14490
OsAffx.17691.1.S1_at--128--3371Chr09:8571014..8571038 (25 bp)
CACCGACATCGCTGATTTTGGCAAG
LOC_Os09g14490
Target Sequence 
ACTGGAGCTGTGCAAGTGCTACTACACTGATCATCTACCACCACTTGGACAATTGCCAAACCTGAAGCAGCTCAAGCTGA
CGAGCCTGTGGAAATTGAGAAGCATAGGGCCTGAGTTCTACGGCGATTGCGAGGCCCCATTTCAGTGTCTTGAGACATTG
GTGGTACAGAACCTGGTTGCATGGGAGGAATGGTGGCTACCTGAAAACCATCCACATTGTGTCTTCCCTCTCCTTCGTAC
GATCGACATCAGGGGCTCACACAAGCTTGTGCGCCTTCCACTGTCAAATCTCCATGCCCTTGCAGGGATCACCGTATCAT
CGTGCAGCAAGTTAGAGACCATAGTTGGGCTCAAGGAGCGCTGTGAAGTGACTGCTGGGAACGGTGGATTGCAAGCAGGT
CAGACTAACGTGCTTCCCTCCCTTCGAAGGGTAAAGATCACTGCTTGCCCTTCACTGGAGGAGCCTCTGATATCGATGCT
TCGCCGGCAGACGGAGATCGGCTTCTCCTACTGGGAACAAAGCCCCAGCACCTCTCCCACCGACATCGCTGATTTTGGCA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis