Browse Element(s) Details


OsAffx.6270.1.S1_at

Description tigr:9637.m01153
TID=OsAffx.6270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1445011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14410Os.52217.1.S1_at11/119+8509839..8515543NB-ARC domain containing protein, expressed
LOC_Os09g14420NANA9+8518840..8519247hypothetical protein
LOC_Os09g14430NANA9+8523346..8530953transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440OsAffx.6269.1.S1_at11/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.14491.2.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.47463.1.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14450OsAffx.6270.1.S1_s_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14450OsAffx.6270.1.S1_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14460NANA9+8548608..8549698hypothetical protein
LOC_Os09g14470NANA9+8551277..8555712retrotransposon protein, putative, unclassified
LOC_Os09g14480OsAffx.10091.1.S1_at1/119+8557251..8562773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14490OsAffx.17691.1.S1_at11/119+8563277..8571068NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6270.1.S1_at--170--4311Chr09:8540599..8540623 (25 bp)
CCTATTCAGTGGACTTCTGAGACCA
LOC_Os09g14450
OsAffx.6270.1.S1_at--647--3691Chr09:8540600..8540624 (25 bp)
CTATTCAGTGGACTTCTGAGACCAA
LOC_Os09g14450
OsAffx.6270.1.S1_at--833--10211Chr09:8540601..8540625 (25 bp)
TATTCAGTGGACTTCTGAGACCAAT
LOC_Os09g14450
OsAffx.6270.1.S1_at--1031--111Chr09:8540602..8540626 (25 bp)
ATTCAGTGGACTTCTGAGACCAATG
LOC_Os09g14450
OsAffx.6270.1.S1_at--82--10531Chr09:8540603..8540627 (25 bp)
TTCAGTGGACTTCTGAGACCAATGG
LOC_Os09g14450
OsAffx.6270.1.S1_at--856--3451Chr09:8540605..8540629 (25 bp)
CAGTGGACTTCTGAGACCAATGGAT
LOC_Os09g14450
OsAffx.6270.1.S1_at--432--1091Chr09:8540606..8540630 (25 bp)
AGTGGACTTCTGAGACCAATGGATG
LOC_Os09g14450
OsAffx.6270.1.S1_at--27--7531Chr09:8540607..8540631 (25 bp)
GTGGACTTCTGAGACCAATGGATGA
LOC_Os09g14450
OsAffx.6270.1.S1_at--373--8531Chr09:8540608..8540632 (25 bp)
TGGACTTCTGAGACCAATGGATGAA
LOC_Os09g14450
OsAffx.6270.1.S1_at--123--5691Chr09:8540610..8540634 (25 bp)
GACTTCTGAGACCAATGGATGAAAC
LOC_Os09g14450
OsAffx.6270.1.S1_at--302--3651Chr09:8540612..8540636 (25 bp)
CTTCTGAGACCAATGGATGAAACTC
LOC_Os09g14450
Target Sequence 
CCTATTCAGTGGACTTCTGAGACCAATGGATGAAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis