Browse Element(s) Details


Os.52217.1.S1_at

Description gb:AK065687.1
DB_XREF= gi:32975705
TID=Os.52217.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039H12, full insert sequence.
FL= gb:AK065687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1441011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14370Os.45977.1.S1_at1/119+8486359..8489755retrotransposon protein, putative, unclassified
LOC_Os09g14380NANA9+8493471..8494840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14390NANA9+8496999..8499397transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14400OsAffx.24767.1.S1_x_at1/119+8503916..8505015hypothetical protein
LOC_Os09g14410Os.52217.1.S1_at11/119+8509839..8515543NB-ARC domain containing protein, expressed
LOC_Os09g14420NANA9+8518840..8519247hypothetical protein
LOC_Os09g14430NANA9+8523346..8530953transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440OsAffx.6269.1.S1_at11/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.14491.2.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14440Os.47463.1.S1_x_at1/119+8531055..8534150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g14450OsAffx.6270.1.S1_s_at11/119+8536184..8541199NB-ARC domain containing protein, expressed
LOC_Os09g14450OsAffx.6270.1.S1_at11/119+8536184..8541199NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52217.1.S1_at--503--131Chr09:8510381..8510405 (25 bp)
ATTAAGACAGCGGTTGGCCCTCAGT
LOC_Os09g14410
Os.52217.1.S1_at--754--6611Chr09:8510358..8510382 (25 bp)
GTTGGAAGATCGTCCTTCTGCATAT
LOC_Os09g14410
Os.52217.1.S1_at--320--2711Chr09:8510321..8510345 (25 bp)
AAGCTTGTCAGGATGGCCTCACAAA
LOC_Os09g14410
Os.52217.1.S1_at--22--3291Chr09:8510300..8510324 (25 bp)
CAAACTGGCCTTCTGGATAGCTTAA
LOC_Os09g14410
Os.52217.1.S1_at--659--8511Chr09:8510227..8510251 (25 bp)
TGGCAACCAGAGACTTCACGCTCAT
LOC_Os09g14410
Os.52217.1.S1_at--1022--10511Chr09:8510213..8510237 (25 bp)
TTCACGCTCATTGGAATCTTGCTCG
LOC_Os09g14410
Os.52217.1.S1_at--60--10731Chr09:8510195..8510219 (25 bp)
TTGCTCGCCTTCTTTGCGGCAATAG
LOC_Os09g14410
Os.52217.1.S1_at--242--4991Chr09:8510171..8510195 (25 bp)
GCATGCCTTGCTGGGTTTTATTATA
LOC_Os09g14410
Os.52217.1.S1_at--866--5491Chr09:8510058..8510082 (25 bp)
GAACATGTACTCTATATTCAGGCAA
LOC_Os09g14410
Os.52217.1.S1_at--325--10031Chr09:8509925..8509949 (25 bp)
TAGATAACCGGCAGGCTTGTTTTTT
LOC_Os09g14410
Os.52217.1.S1_at--491--451Chr09:8509843..8509867 (25 bp)
ATCTACTCTGTTTATGTTCTCCTTG
LOC_Os09g14410
Target Sequence 
ATTAAGACAGCGGTTGGCCCTCAGTTGGAAGATCGTCCTTCTGCATATATTATCCTCAGAAAGCTTGTCAGGATGGCCTC
ACAAACTGGCCTTCTGGATAGCTTAAAACGGTATTTCCTCCCTCCACTTGCCATTGTTCTTGTACTCTTGCTGCTGGCAA
CCAGAGACTTCACGCTCATTGGAATCTTGCTCGCCTTCTTTGCGGCAATAGCATGCCTTGCTGGGTTTTATTATATATAT
ATTCAGAAAGCTTCAGGGTGAATACTTAAACCATGCAGCTGGACGACCAATGGAGATTATAAGATAGAGAATTTTATGAC
TGGGAACATGTACTCTATATTCAGGCAATAAAATAAGCTTGATTTGGAGGTACAACTGGTGGCAGAAATTATAACAAAAA
TATCATTTTGAGGTTAAGCAAACCAAATCTTCTGTATGATGGAATGCTCTTCACATTAGATAACCGGCAGGCTTGTTTTT
TTTCATTGGTACGACAGTATGCAGTTCTGTGTATTGTAACTGGTAAAATTTGATATACATCTACTCTGTTTATGTTCTCC
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis