Browse Element(s) Details


Os.25400.1.S1_at

Description gb:AK064380.1
DB_XREF= gi:32974398
TID=Os.25400.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D12, full insert sequence.
FL= gb:AK064380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1454011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14510Os.26699.1.S1_a_at11/119+8584970..8588947Peroxin-3 family protein, expressed
LOC_Os09g14520Os.24683.1.A1_s_at11/119+8589541..8591392integral membrane family protein, putative, expressed
LOC_Os09g14530OsAffx.27789.1.S1_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.3.S1_s_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.2.S1_x_at7/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14540Os.25400.1.S1_at11/119+8602013..8608483Protein phosphatase 2C containing protein, expressed
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein
LOC_Os09g14560OsAffx.17693.1.S1_at10/119+8622666..8625179hypothetical protein
LOC_Os09g14570OsAffx.17694.1.S1_x_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14570OsAffx.17694.1.S1_at11/119+8628024..8628737tropinone reductase homolog At1g07440, putative
LOC_Os09g14580OsAffx.25423.2.S1_x_at10/119+8629074..8632197Protein kinase domain containing protein
LOC_Os09g14580Os.43946.3.S1_x_at7/119+8629074..8632197Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25400.1.S1_at--584--10051Chr09:8602353..8602377 (25 bp)
TAGTTCTATTGTTACCTTATCCTGC
LOC_Os09g14540
Os.25400.1.S1_at--304--10611Chr09:8602319..8602343 (25 bp)
TTCTGGCCGTGTCTGTATTGTGATC
LOC_Os09g14540
Os.25400.1.S1_at--1024--7171Chr09:8602309..8602333 (25 bp)
GTCTGTATTGTGATCGAGACCCTTG
LOC_Os09g14540
Os.25400.1.S1_at--1063--4051Chr09:8602295..8602319 (25 bp)
CGAGACCCTTGTGCACTGCTGTAGC
LOC_Os09g14540
Os.25400.1.S1_at--281--1391Chr09:8602251..8602275 (25 bp)
AGACCTTTGTGCACTGCTGTAGCTT
LOC_Os09g14540
Os.25400.1.S1_at--1037--4731Chr09:8602236..8602260 (25 bp)
GCTGTAGCTTATGCGGTTATGCCAC
LOC_Os09g14540
Os.25400.1.S1_at--1108--4671Chr09:8602224..8602248 (25 bp)
GCGGTTATGCCACCTCTGGAATGAA
LOC_Os09g14540
Os.25400.1.S1_at--537--5991Chr09:8602147..8602171 (25 bp)
GATACAACCTAACAACGGATTTGAA
LOC_Os09g14540
Os.25400.1.S1_at--1031--7891Chr09:8602120..8602144 (25 bp)
GGTTCTTTGTTCAGATTCGTTGCAC
LOC_Os09g14540
Os.25400.1.S1_at--1132--6571Chr09:8602107..8602131 (25 bp)
GATTCGTTGCACTATGGTATGACTA
LOC_Os09g14540
Os.25400.1.S1_at--376--8031Chr09:8602017..8602041 (25 bp)
GGAGTAATTCCTGGTACTACTAGAT
LOC_Os09g14540
Target Sequence 
TAGTTCTATTGTTACCTTATCCTGCACTGCGACGTTCTGGCCGTGTCTGTATTGTGATCGAGACCCTTGTGCACTGCTGT
AGCCGTNTATGTATTGTGATCGAGACCTTTGTGCACTGCTGTAGCTTATGCGGTTATGCCACCTCTGGAATGAATGAAAT
ATTGGAGCCCCTCCNCTCCAAAATATAGCTTTATAGTACGAGATNAGATACAACCTAACAACGGATTTGAATAGGTTCTT
TGTTCAGATTCGTTGCACTATGGTATGACTAATCCAGTAAATTAGGTTGCTATATTTTGAGATTTTTGAGATGGAGGGAG
TATTTTTCTAGATATTGGAGTAATTCCTGGTACTACTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis