Browse Element(s) Details


Os.11929.1.S1_at

Description gb:AK064786.1
DB_XREF= gi:32974804
TID=Os.11929.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.11929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B17, full insert sequence.
FL= gb:AK064786.1 gb:AK099233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3873011/11peroxisomal membrane protein, putative, expressed
LOC_Os09g1460011/11peroxisomal membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38680OsAffx.25421.1.S1_at11/113+21429102..21430207hypothetical protein
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein
LOC_Os03g38700OsAffx.17694.1.S1_x_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38700OsAffx.17694.1.S1_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38710OsAffx.25423.2.S1_x_at10/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38710Os.43946.3.S1_x_at7/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38720OsAffx.6272.1.S1_at11/113+21444889..21449811Proteasome maturation factor UMP1 family protein
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed
LOC_Os03g38740Os.50406.1.S1_x_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.1.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.2.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38750OsAffx.3436.1.S1_at8/113+21476928..21479629hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11929.1.S1_at--245--4632Chr09:8644184..8644205 (22 bp)
GCGAGGCACTGTTTCCATTCAAGGA
LOC_Os09g14600
Os.11929.1.S1_at--1114--6672Chr09:8644216..8644240 (25 bp)
GTTCCCGCAAAGGTTGTGTTCGATC
LOC_Os09g14600
Os.11929.1.S1_at--131--1952Chr09:8644243..8644267 (25 bp)
ACGGCCTGGTCTGCGATATGGAACA
LOC_Os09g14600
Os.11929.1.S1_at--245--2132Chr09:8644265..8644289 (25 bp)
ACAGTATCTACTTCGTGGTCTTGGG
LOC_Os09g14600
Os.11929.1.S1_at--439--192Chr09:8644318..8644342 (25 bp)
ATTTCCAGTGAGCTCAAATCCACGT
LOC_Os09g14600
Os.11929.1.S1_at--1092--2272Chr09:8644333..8644357 (25 bp)
AAATCCACGTTTTGGCCCATGCTTA
LOC_Os09g14600
Os.11929.1.S1_at--552--7552Chr09:8644909..8644933 (25 bp)
GTGGCCTTTTGCACACTTGGTTACA
LOC_Os09g14600
Os.11929.1.S1_at--665--2072Chr09:8644931..8644955 (25 bp)
ACATATGGCCTAGTTCCTGTTGAAC
LOC_Os09g14600
Os.11929.1.S1_at--145--2352Chr09:8644956..8644980 (25 bp)
AAAGACTTCTGTGGGTTGACTGCGT
LOC_Os09g14600
Os.11929.1.S1_at--788--292Chr09:8645286..8645310 (25 bp)
ATAGCGAACGGTATAGCCAGCCAAG
LOC_Os09g14600
Os.11929.1.S1_at--336--5072Chr09:8645364..8645388 (25 bp)
GCAGCTCTGCAGGTGTAACCTTTTT
LOC_Os09g14600
Target Sequence 
GCGAGGCACTGTTTCCATTCAAGGATTGGTGGGTTGTTCCCGCAAAGGTTGTGTTCGATCAGACGGCCTGGTCTGCGATA
TGGAACAGTATCTACTTCGTGGTCTTGGGGTTNCTTCGNTTGGAATCACCGGCCACTATTTCCAGTGAGCTCAAATCCAC
GTTTTGGCCCATGCTTACTGCCGGCTGGAAGTTGTGGCCTTTTGCACACTTGGTTACATATGGCCTAGTTCCTGTTGAAC
AAAGACTTCTGTGGGTTGACTGCGTGGAGTTAATCTGGGTTACAATACTGTCAACTTACTCCAACGAGAAATCTGAAGCA
AGGAACTCCGAGGACGCATCCACATCAAATGCTTCCAATGACAATTCAATATAGCGAACGGTATAGCCAGCCAAGCTGCC
CTTTACCTTCATCATTTTGGGCTTGTATATATTGTACAATTTGTAGCTGCAGCTCTGCAGGTGTAACCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis