Browse Element(s) Details


Os.28186.2.S1_s_at

Description gb:AK066278.1
DB_XREF= gi:32976296
TID=Os.28186.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062H12, full insert sequence.
FL= gb:AK066278.1 gb:AK072334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3874011/11Type III restriction enzyme, res subunit family protein, expressed
LOC_Os09g1461011/11RNase3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38689OsAffx.17693.1.S1_at9/113+21432145..21434644hypothetical protein
LOC_Os03g38700OsAffx.17694.1.S1_x_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38700OsAffx.17694.1.S1_at11/113+21437450..21438141tropinone reductase homolog At1g07440, putative
LOC_Os03g38710OsAffx.25423.2.S1_x_at10/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38710Os.43946.3.S1_x_at7/113+21438478..21441640Protein kinase domain containing protein
LOC_Os03g38720OsAffx.6272.1.S1_at11/113+21444889..21449811Proteasome maturation factor UMP1 family protein
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed
LOC_Os03g38740Os.50406.1.S1_x_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.1.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.2.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38750OsAffx.3436.1.S1_at8/113+21476928..21479629hypothetical protein
LOC_Os03g38764NANA3+21480450..21486038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38780NANA3+21488298..21489899hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006396biological_processRNA processing
GO:0009880biological_processembryonic pattern specification
GO:0009908biological_processflower development
GO:0010050biological_processvegetative phase change
GO:0010098biological_processsuspensor development
GO:0010228biological_processvegetative to reproductive phase transition
GO:0030422biological_processRNA interference, production of siRNA
GO:0031053biological_processprimary microRNA processing
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28186.2.S1_s_at--967--252Chr09:8650143..8650167 (25 bp)
ATATGTTACAACTCGGCACCTTTTT
LOC_Os09g14610
Os.28186.2.S1_s_at--499--6752Chr09:8650139..8650163 (25 bp)
GTTACAACTCGGCACCTTTTTAGTG
LOC_Os09g14610
Os.28186.2.S1_s_at--608--1932Chr09:8650133..8650157 (25 bp)
ACTCGGCACCTTTTTAGTGAATACA
LOC_Os09g14610
Os.28186.2.S1_s_at--551--1112Chr09:8650118..8650142 (25 bp)
AGTGAATACAGGCTTCAACATGAAG
LOC_Os09g14610
Os.28186.2.S1_s_at--775--2112Chr09:8650111..8650135 (25 bp)
ACAGGCTTCAACATGAAGGCATATT
LOC_Os09g14610
Os.28186.2.S1_s_at--650--5532Chr09:8650074..8650098 (25 bp)
GAAAAACTTGATCTCCAATGCAGCT
LOC_Os09g14610
Os.28186.2.S1_s_at--949--2512Chr09:8650070..8650094 (25 bp)
AACTTGATCTCCAATGCAGCTCTGT
LOC_Os09g14610
Os.28186.2.S1_s_at--775--6412Chr09:8650065..8650089 (25 bp)
GATCTCCAATGCAGCTCTGTGCCAG
LOC_Os09g14610
Os.28186.2.S1_s_at--767--3012Chr09:8650058..8650082 (25 bp)
AATGCAGCTCTGTGCCAGCTGGCCT
LOC_Os09g14610
Os.28186.2.S1_s_at--1106--7272Chr09:8650047..8650071 (25 bp)
GTGCCAGCTGGCCTGCAGCAGTAAT
LOC_Os09g14610
Os.28186.2.S1_s_at--712--4712Chr09:8650041..8650065 (25 bp)
GCTGGCCTGCAGCAGTAATCTTGTG
LOC_Os09g14610
Target Sequence 
ATATGTTACAACTCGGCACCTTTTTAGTGAATACAGGCTTCAACATGAAGGCATATTAACAAAAATGAAGAAAAACTTGA
TCTCCAATGCAGCTCTGTGCCAGCTGGCCTGCAGCAGTAATCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28186.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis