Browse Element(s) Details


OsAffx.3436.1.S1_at

Description tigr:9631.m03720
TID=OsAffx.3436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g387508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38730Os.11929.1.S1_at11/113+21452687..21455242peroxisomal membrane protein, putative, expressed
LOC_Os03g38740Os.50406.1.S1_x_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.1.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38740Os.28186.2.S1_s_at11/113+21455408..21470199Type III restriction enzyme, res subunit family protein, expressed
LOC_Os03g38750OsAffx.3436.1.S1_at8/113+21476928..21479629hypothetical protein
LOC_Os03g38764NANA3+21480450..21486038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38780NANA3+21488298..21489899hypothetical protein
LOC_Os03g38790Os.54422.1.S1_at10/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38790Os.40082.1.A1_x_at3/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38800Os.54109.1.S1_at11/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38800Os.38396.1.A1_at1/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38804NANA3+21502261..21502578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3436.1.S1_at--1081--10032Chr09:8669714..8669738 (25 bp)
TAGAGACGCTGAAGGACAGCCTGGC
NONE
OsAffx.3436.1.S1_at--760--3531Chr03:21479498..21479522 (25 bp)
CATGCGCGGCCAAAGTGGGCGTGGT
LOC_Os03g38750
OsAffx.3436.1.S1_at--515--3351NONE
CACGACATGGCGGTTAGATGATGAT
NONE
OsAffx.3436.1.S1_at--653--9071NONE
TGCTAGAGATTATGCGGTTGGCGAC
NONE
OsAffx.3436.1.S1_at--651--652Chr09:8667539..8667826 (25 bp)
ATGCAGCTCGTCGTCCTGCGCGTGG
NONE
OsAffx.3436.1.S1_at--261--994Chr10:2838976..2839206 (25 bp)
AGGAGGCCGAGGAAGCCCATCCAGC
NONE
OsAffx.3436.1.S1_at--773--6191NONE
GAGGAAGCCCATCCAGCCGACTACA
NONE
OsAffx.3436.1.S1_at--46--4171Chr03:21476991..21477015 (25 bp)
CGCCGGTACACAACACTGCTTGGGT
LOC_Os03g38750
OsAffx.3436.1.S1_at--1085--7831Chr03:21476987..21477011 (25 bp)
GGTACACAACACTGCTTGGGTGCTT
LOC_Os03g38750
OsAffx.3436.1.S1_at--704--8611Chr03:21476971..21476995 (25 bp)
TGGGTGCTTTTGAAGGTATAGGTTC
LOC_Os03g38750
OsAffx.3436.1.S1_at--45--1032Chr09:8667125..8667149 (25 bp)
AGGTATAGGTTCAGAAATCTTCACT
NONE
Target Sequence 
TAGAGACGCTGAAGGACAGCCTGGCGCGGCAGCGAGCTTGGCGGCATCGGGGAATTGCCTGGAGATGGCCTGGCATGCGC
GGCCAAAGTGGGCGTGGTGTAGCGACGGGGCGAGGAGGCACGACATGGCGGTTAGATGATGATATTGCTAGAGATTATGC
GGTTGGCGACGTGGGCTTGGAGGGTGTGGAGGACATGCAGCTCGTCGTCCTGCGCGTGGCCAAAGGAGGCGACGGCGGTG
GCGCTGCAGCGGAAGCTGAGGAGGCCGAGGAAGCCCATCCAGCCGACTACACCGCCGGTACACAACACTGCTTGGGTGCT
TTTGAAGGTATAGGTTCAGAAATCTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis