Browse Element(s) Details


Os.54422.1.S1_at

Description gb:AK105133.1
DB_XREF= gi:32990342
TID=Os.54422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H11, full insert sequence.
FL= gb:AK105133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3879010/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38750OsAffx.3436.1.S1_at8/113+21476928..21479629hypothetical protein
LOC_Os03g38764NANA3+21480450..21486038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38780NANA3+21488298..21489899hypothetical protein
LOC_Os03g38790Os.54422.1.S1_at10/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38790Os.40082.1.A1_x_at3/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38800Os.54109.1.S1_at11/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38800Os.38396.1.A1_at1/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38804NANA3+21502261..21502578hypothetical protein
LOC_Os03g38810OsAffx.10033.2.S1_at11/113+21504891..21506184hypothetical protein
LOC_Os03g38810OsAffx.10033.1.S1_at2/113+21504891..21506184hypothetical protein
LOC_Os03g38820Os.35344.18.S1_x_at8/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820Os.35344.3.S1_x_at7/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820OsAffx.22940.5.S1_x_at2/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38830Os.54774.1.S1_x_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38830Os.54774.1.S1_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_x_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_at2/113+21524034..21524856retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54422.1.S1_at--543--8311Chr03:21496656..21496680 (25 bp)
GGCTCTCGGAGGAGTACTATCACCA
LOC_Os03g38790
Os.54422.1.S1_at--818--7251NONE
GTCCTCCAGACTGTTTGTGCTGTAG
NONE
Os.54422.1.S1_at--610--7311Chr03:21498393..21498417 (25 bp)
GTGCTGTAGCATTAACTGTCGTTAT
LOC_Os03g38790
Os.54422.1.S1_at--788--8191Chr03:21498458..21498867 (25 bp)
GGAATAATTGCTGCCGTCAGTGCAC
LOC_Os03g38790
Os.54422.1.S1_at--832--7331Chr03:21498923..21498947 (25 bp)
GTGCACTTGTACTGATATTCTACAT
LOC_Os03g38790
Os.54422.1.S1_at--1042--9771Chr03:21498972..21498996 (25 bp)
TAAGGTTTATGTCCCAGTGAGCGCG
LOC_Os03g38790
Os.54422.1.S1_at--639--8611Chr03:21499023..21499047 (25 bp)
TGGTGCATTCTCTGGATAATTCTGA
LOC_Os03g38790
Os.54422.1.S1_at--1074--4031Chr03:21499054..21499078 (25 bp)
CGATCTGTTCTTCTAATTTGTTGCA
LOC_Os03g38790
Os.54422.1.S1_at--473--8811Chr03:21499072..21499096 (25 bp)
TGTTGCATACCTGTATTCTGCCATC
LOC_Os03g38790
Os.54422.1.S1_at--539--6871Chr03:21499084..21499108 (25 bp)
GTATTCTGCCATCCCAGTGATGAGA
LOC_Os03g38790
Os.54422.1.S1_at--226--3051Chr03:21499150..21499174 (25 bp)
AATCTCGGCAGTTCAGACACTGGTT
LOC_Os03g38790
Target Sequence 
GGCTCTCGGAGGAGTACTATCACCACCCACCGCCGGCGGGGAGGAAGCAGATCATGGAGGATTTCTACGTCACCATCCCG
TATGGCGCCGCGGTCCTCGTCGGGGGCGTCGCCGGCTACCTCAAGCGCGGGAGCAAGGCATCGCTGGCCGCGGGCGGCGG
GTTCGGCGGCGCGCTCCTCCTCGCCGGCGCGCTGAGCGCCAGGGCCTTCGCGCGCGGCCACCCCAGCGGCTCCCTCTTCG
CCGCCGTCCTCCAGACTGTTTGTGCTGTAGCATTAACTGTCGTTATGGGAATAAGATACATCAAAACAAGAAAGGTAATG
CCAGCTGGAATAATTGCTGCCGTCAGTGCACTTGTACTGATATTCTACATCTACAAGATATCAAATGGTGGCAATAAGGT
TTATGTCCCAGTGAGCGCGGAGTGATACTGGAGGCCAGGGTATTATGGTGCATTCTCTGGATAATTCTGAATCGATCGAT
CTGTTCTTCTAATTTGTTGCATACCTGTATTCTGCCATCCCAGTGATGAGAACATCGTTCTGCATAATGTGAATTATGAA
TGACCCATGAAAAATCTCGGCAGTTCAGACACTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis