Browse Element(s) Details


Os.54109.1.S1_at

Description gb:AK101987.1
DB_XREF= gi:32987196
TID=Os.54109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079B04, full insert sequence.
FL= gb:AK101987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3880011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38750OsAffx.3436.1.S1_at8/113+21476928..21479629hypothetical protein
LOC_Os03g38764NANA3+21480450..21486038retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38780NANA3+21488298..21489899hypothetical protein
LOC_Os03g38790Os.54422.1.S1_at10/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38790Os.40082.1.A1_x_at3/113+21496612..21499175Uncharacterised protein family containing protein, expressed
LOC_Os03g38800Os.54109.1.S1_at11/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38800Os.38396.1.A1_at1/113+21499440..21501420ATPase, AAA family protein, expressed
LOC_Os03g38804NANA3+21502261..21502578hypothetical protein
LOC_Os03g38810OsAffx.10033.2.S1_at11/113+21504891..21506184hypothetical protein
LOC_Os03g38810OsAffx.10033.1.S1_at2/113+21504891..21506184hypothetical protein
LOC_Os03g38820Os.35344.18.S1_x_at8/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820Os.35344.3.S1_x_at7/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38820OsAffx.22940.5.S1_x_at2/113+21510251..21515512transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g38830Os.54774.1.S1_x_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38830Os.54774.1.S1_at2/113+21520137..21522348retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_x_at2/113+21524034..21524856retrotransposon, putative, centromere-specific
LOC_Os03g38840Os.54774.1.S1_at2/113+21524034..21524856retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54109.1.S1_at--985--9411Chr03:21499904..21499928 (25 bp)
TCGTGGAGTTCCTCCGTGAGAGGAC
LOC_Os03g38800
Os.54109.1.S1_at--221--931Chr03:21499859..21499883 (25 bp)
AGGCAGCGATCGACGACAACCAAGT
LOC_Os03g38800
Os.54109.1.S1_at--615--651Chr03:21499817..21499841 (25 bp)
ATGCAGCTTAACAAATCTTCAGAGA
LOC_Os03g38800
Os.54109.1.S1_at--154--31Chr03:21499764..21499788 (25 bp)
ATTGGGTTGCATGATCACGACAGTA
LOC_Os03g38800
Os.54109.1.S1_at--718--3072Chr03:21499704..21499728 (25 bp)
AATCATTTGTCATGCTCACTATAAT
LOC_Os03g38800
Os.54109.1.S1_at--246--3211Chr03:21499659..21499683 (25 bp)
CAATGGCATAGCTAGGCAAGGCAAC
LOC_Os03g38800
Os.54109.1.S1_at--1102--5031Chr03:21499617..21499641 (25 bp)
GCAGAGCGTCTGGTCATGGATTAAC
LOC_Os03g38800
Os.54109.1.S1_at--33--3512Chr08:5007638..5007681 (25 bp)
CATGGATTAACTGTTGCTTTCTGAA
NONE
Os.54109.1.S1_at--345--3251Chr03:21499532..21499556 (25 bp)
CAACCCCAGCCTAACTTAACAGAGT
LOC_Os03g38800
Os.54109.1.S1_at--1133--5651Chr03:21499492..21499516 (25 bp)
GACAGGAAACTACTCCGCGTTGGAG
LOC_Os03g38800
Os.54109.1.S1_at--66--8651Chr03:21499457..21499481 (25 bp)
TGGGACTCTGCATTTTCTGAATAAT
LOC_Os03g38800
Target Sequence 
TCGTGGAGTTCCTCCGTGAGAGGACGCGGCGGAGGGCAAGACAAGAGGCAGCGATCGACGACAACCAAGTGGTAGCAGAA
AAAGGCAATGCAGCTTAACAAATCTTCAGAGAATTTACTTCACAATAACGAGATGAGATGATTGGGTTGCATGATCACGA
CAGTAGCAAACTTGGTACTAGTAGTACTTACTGAATTAATAATCATTTGTCATGCTCACTATAATTTCTGTTGCAAATCT
GCAAGCAATGGCATAGCTAGGCAAGGCAACAGAGAACAGAAGAGAGTGCAGAGCGTCTGGTCATGGATTAACTGTTGCTT
TCTGAAAAGCTGGGCTTATCTTAAAACAAATGATGAGCTGTGGTTTTAGTTTCAACCCCAGCCTAACTTAACAGAGTAGC
ATATAAACATATGACAGGAAACTACTCCGCGTTGGAGGGGTAAGAAATGGGACTCTGCATTTTCTGAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis