Browse Element(s) Details


Os.38396.1.A1_at

Description gb:NM_192509.1
DB_XREF= gi:34912101
GEN=OSJNBb0024F06.2
TID=Os.38396.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0024F06.2 (OSJNBb0024F06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.2 (OSJNBb0024F06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4014011/11hypothetical protein
LOC_Os03g388001/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38396.1.A1_at--873--1651Chr01:22969067..22969091 (25 bp)
AGCGCGGCCGATGGAATTCGCTGTC
LOC_Os01g40140
Os.38396.1.A1_at--1052--3151Chr01:22969053..22969077 (25 bp)
AATTCGCTGTCCATGGTGCCGGCTA
LOC_Os01g40140
Os.38396.1.A1_at--877--811Chr01:22969041..22969065 (25 bp)
ATGGTGCCGGCTACTCGATGTCCGA
LOC_Os01g40140
Os.38396.1.A1_at--1134--6411Chr01:22968867..22968891 (25 bp)
GATCTACATGAACGAGAGCTGGTCG
LOC_Os01g40140
Os.38396.1.A1_at--1108--7571Chr01:22968785..22968809 (25 bp)
GGGCTGAAGCGATCCATCGTCGCCG
LOC_Os01g40140
Os.38396.1.A1_at--430--7911Chr01:22968438..22968461 (24 bp)
GGATTGAGCAGCAGAGCCTGACGCT
LOC_Os01g40140
Os.38396.1.A1_at--536--10771Chr01:22968435..22968459 (25 bp)
TTGAGCAGCAGAGCCTGACGCTGTC
LOC_Os01g40140
Os.38396.1.A1_at--595--1631Chr01:22968363..22968387 (25 bp)
AGCGGGTGGTCGTCTTCACTCTTCA
LOC_Os01g40140
Os.38396.1.A1_at--396--4692Chr03:21500003..21500125 (25 bp)
GCGGATGGACATGCATGCTCGCCGG
LOC_Os03g38800
Os.38396.1.A1_at--285--631Chr01:22968236..22968260 (25 bp)
ATGCTGCTGCGCAGCTAGCGACGAC
LOC_Os01g40140
Os.38396.1.A1_at--1136--4771Chr01:22968231..22968255 (25 bp)
GCTGCGCAGCTAGCGACGACGTCGA
LOC_Os01g40140
Target Sequence 
AGCGCGGCCGATGGAATTCGCTGTCCATGGTGCCGGCTACTCGATGTCCGACGTCTTCGAGGGCGTGGAGTTCAGGTGGA
CTTCCGTCCCCGCGGAAGGCGGCGCGGCGGCGGGAGCGCGAGCTCAAGATCTACATGAACGAGAGCTGGTCGTGGCGCGG
CATCGTCCACCACCACCCCGCCACGTTCGACACGGTCGCCATGGACCCGGGGCTGAAGCGATCCATCGTCGCCGACCTCG
ACCCGGGGCAGGGCGTGGAAGCGAGGATTGAGCAGCAGAGCCTGACGCTGTCCGGGCTGCTCAACTTCATCGACGGGCTG
TGGTCGACGAGCGGCGAGGAGCGGGTGGTCGTCTTCACTCTTCACCACCAACTACAAGGAACGCCTCGACGCGGCGCTGC
TCCGGCCGGGGCGGATGGACATGCATGCTCGCCGGCGTGGACGCCACGCCGGCCGAGGTGTCGGAGATGCTGCTGCGCAG
CTAGCGACGACGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38396.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis