Browse Element(s) Details


OsAffx.11400.1.S1_s_at

Description gb:NM_192512.1
DB_XREF= gi:34912107
GEN=OSJNBb0024F06.5
TID=OsAffx.11400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative translation initiation factor IF-2 (OSJNBb0024F06.5), mRNA.
PROD=putative translation initiation factor IF-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4017010/11translation initiation factor, putative
LOC_Os01g401501/11Elongation factor Tu GTP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11400.1.S1_s_at--173--8651Chr01:22988427..22988451 (25 bp)
TGGGAAAATTGCTTCAATCCAGAAT
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--821--10491Chr01:22988439..22988463 (25 bp)
TTCAATCCAGAATAGCCATAAGCAA
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--364--3534Chr06:18961888..18961926 (24 bp)
CATAAGCAAGTTGATGTGGCAAGAG
NONE
OsAffx.11400.1.S1_s_at--370--2331NONE
AAAGATTGTAGGGAGCAACCAAGAC
NONE
OsAffx.11400.1.S1_s_at--1147--10071Chr01:22988586..22988610 (25 bp)
TAGGGAGCAACCAAGACGAGGCAAA
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--1036--4371Chr01:22988596..22988620 (25 bp)
CCAAGACGAGGCAAACAATAGTTTT
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--741--10051Chr01:22988614..22988638 (25 bp)
TAGTTTTGGTAGAACATTTGGACTT
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--219--5491Chr01:22988625..22988649 (25 bp)
GAACATTTGGACTTGATGATGAGCT
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--662--8131Chr01:22988633..22988657 (25 bp)
GGACTTGATGATGAGCTTGTTAGCT
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--521--711Chr01:22988640..22988664 (25 bp)
ATGATGAGCTTGTTAGCTACATAAC
LOC_Os01g40170
OsAffx.11400.1.S1_s_at--321--9991Chr01:22988653..22988677 (25 bp)
TAGCTACATAACAAAGGAGTCGATT
LOC_Os01g40170
Target Sequence 
TGGGAAAATTGCTTCAATCCAGAATAGCCATAAGCAAGTTGATGTGGCAAGAGAGGGAGAGAAGGTTGCGATAAAGATTG
TAGGGAGCAACCAAGACGAGGCAAACAATAGTTTTGGTAGAACATTTGGACTTGATGATGAGCTTGTTAGCTACATAACA
AAGGAGTCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11400.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis