Browse Element(s) Details


OsAffx.21423.1.S1_at

Description tigr:9629.m03830
TID=OsAffx.21423.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4016011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein
LOC_Os01g40190OsAffx.21421.1.S1_x_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g40190Os.56014.1.S1_at11/111+23002978..23005466transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21423.1.S1_at--98--10551Chr01:22979500..22979524 (25 bp)
TTCAGGCTGAGCGAGCTCTTGGCTA
LOC_Os01g40160
OsAffx.21423.1.S1_at--501--7931Chr01:22979462..22979486 (25 bp)
GGATTGCCTATCTCTCAATTTCAGA
LOC_Os01g40160
OsAffx.21423.1.S1_at--1141--2611Chr01:22978688..22978712 (25 bp)
AACCGATTTGTTGCTGCGTTTGGCA
LOC_Os01g40160
OsAffx.21423.1.S1_at--193--6871Chr01:22978671..22978695 (25 bp)
GTTTGGCAGGCTGACTACCTTGTCT
LOC_Os01g40160
OsAffx.21423.1.S1_at--43--7171Chr01:22978650..22978674 (25 bp)
GTCTCTCTGCCGGATATTTGACGAG
LOC_Os01g40160
OsAffx.21423.1.S1_at--961--6111Chr01:22978628..22978652 (25 bp)
GAGTGTGACCTTCTATGGACGTTGT
LOC_Os01g40160
OsAffx.21423.1.S1_at--573--5751Chr01:22978611..22978635 (25 bp)
GACGTTGTACCTCCTTAAAGCTGCA
LOC_Os01g40160
OsAffx.21423.1.S1_at--1155--7691Chr01:22978276..22978299 (24 bp)
GGGTCCAGAAACATTCTTGCCAGTA
LOC_Os01g40160
OsAffx.21423.1.S1_at--843--6191Chr01:22978230..22978254 (25 bp)
GAGGCAAATCCTCTTCCCAGAGAAA
LOC_Os01g40160
OsAffx.21423.1.S1_at--681--10291Chr01:22978179..22978203 (25 bp)
TTTCCAGCACTACCATTTGGCACAA
LOC_Os01g40160
OsAffx.21423.1.S1_at--486--6291Chr01:22978025..22978049 (25 bp)
GATGATGGAACCTCCTCAACAGGAT
LOC_Os01g40160
Target Sequence 
TTCAGGCTGAGCGAGCTCTTGGCTAGCGCCACCAACCTGGATTGCCTATCTCTCAATTTCAGAAATGAGGAGATTTGGAT
ACAACCTGAGGATTCAAACCGATTTGTTGCTGCGTTTGGCAGGCTGACTACCTTGTCTCTCTGCCGGATATTTGACGAGT
GTGACCTTCTATGGACGTTGTACCTCCTTAAAGCTGCACCGTCCCTCCGAAAATTTAGTATTGGGGTCCAGAAACATTCT
TGCCAGTATGGAGGAAGTGAAGTCAAGCAGAGGCAAATCCTCTTCCCAGAGAAAAGGAACATGTTCTGGATAGATTTTAA
TTTCCAGCACTACCATTTGGCACAACTAGAGATTTGTGGATTTGAGGCAAATGACAAATATATGATATTTACAAGATTAA
TCATGGAGCAAGCTAAAAATCTAAAGGTTGTCATTCTGTCAGATGAGAAGACTTGTGATGAGTGTGATTTTCAGGATGAT
GGAACCTCCTCAACAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis