Browse Element(s) Details


Os.5450.1.S1_at

Description gb:AK059387.1
DB_XREF= gi:32969405
TID=Os.5450.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H02, full insert sequence.
FL= gb:AK103402.1 gb:AK059387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4011010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40070OsAffx.23593.1.S1_s_at11/111+22931382..22933651expressed protein
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5450.1.S1_at--759--1171NONE
AGTACTTCAGACGAATCCAGATGGA
NONE
Os.5450.1.S1_at--1116--5031Chr01:22952538..22952562 (25 bp)
GCAGATGCACGCTATCTTGATGGAT
LOC_Os01g40110
Os.5450.1.S1_at--175--9551Chr01:22952386..22952410 (25 bp)
TCTTCAAGCTCCAGGTTTTCTGTTG
LOC_Os01g40110
Os.5450.1.S1_at--158--6811Chr01:22952372..22952396 (25 bp)
GTTTTCTGTTGATGGCAAGCGCATT
LOC_Os01g40110
Os.5450.1.S1_at--943--2151Chr01:22952304..22952328 (25 bp)
ACAGCTGATTCCTTGTCGACAGATC
LOC_Os01g40110
Os.5450.1.S1_at--772--4631Chr01:22952254..22952278 (25 bp)
GCGTAAAGCCGAGTTTTGGTTCTAT
LOC_Os01g40110
Os.5450.1.S1_at--967--10171Chr01:22952225..22952249 (25 bp)
TATACACTGTACTGCCTGGATCATC
LOC_Os01g40110
Os.5450.1.S1_at--50--6431Chr01:22952207..22952231 (25 bp)
GATCATCCATACGATCCGTGGAACT
LOC_Os01g40110
Os.5450.1.S1_at--858--10831Chr01:22952157..22952181 (25 bp)
TTGGGAGCAACAGCCGATCTGATCG
LOC_Os01g40110
Os.5450.1.S1_at--503--6411Chr01:22952142..22952166 (25 bp)
GATCTGATCGCAAACTGATCTTGGC
LOC_Os01g40110
Os.5450.1.S1_at--851--2471Chr01:22952119..22952141 (23 bp)
AACACGGCTTGCTATCAATGACAAA
LOC_Os01g40110
Target Sequence 
AGTACTTCAGACGAATCCAGATGGAGTTCTGAAGTTAAAGAAGCTACAAAAGCTAGTAACTAAGGAACTTCTGGAATGTG
GTCTGACAGAAGATAAGGAGCAGATGCACGCTATCTTGATGGATAAGATTTCTTCAAGCTCCAGGTTTTCTGTTGATGGC
AAGCGCATTAGATTGGTTGCAAAGGATTGAGAGTAATGGATCATGCCCCCTGACAGCTGATTCCTTGTCGACAGATCAAT
GATGGTCTTACAGTTTGTTATGGCGTAAAGCCGAGTTTTGGTTCTATTATTTATACACTGTACTGCCTGGATCATCCATA
CGATCCGTGGAACTGATGTGAATTTTGCATTTGATTGTTTTGGGAGCAACAGCCGATCTGATCGCAAACTGATCTTGGCN
AACACGGCTTGCTATCAATGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis