Browse Element(s) Details


OsAffx.21424.1.S1_at

Description tigr:9629.m03829
TID=OsAffx.21424.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Elongation factor Tu GTP binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4015010/11Elongation factor Tu GTP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40180NANA1+22992964..22993860hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21424.1.S1_at--258--711Chr01:22975941..22975965 (25 bp)
ATGATTTCAATATAGGGCCTGTCCA
LOC_Os01g40150
OsAffx.21424.1.S1_at--1030--10131Chr01:22976111..22976135 (25 bp)
TATCACCTTTTCGACCAATTTACCA
LOC_Os01g40150
OsAffx.21424.1.S1_at--947--1231Chr01:22976175..22976199 (25 bp)
AGATTGTAGAGGCTGTGTTCCCTTG
LOC_Os01g40150
OsAffx.21424.1.S1_at--1081--7411Chr01:22976189..22976213 (25 bp)
GTGTTCCCTTGTGTTCTCAAGATCA
LOC_Os01g40150
OsAffx.21424.1.S1_at--11--1291Chr01:22976208..22976232 (25 bp)
AGATCATTCCAGACTATGTGTTCAA
LOC_Os01g40150
OsAffx.21424.1.S1_at--334--951Chr01:22976238..22976262 (25 bp)
AGGACCCAATTGTCTTAGGCGTTGA
LOC_Os01g40150
OsAffx.21424.1.S1_at--85--9771NONE
TAAGGTGGGAACTCCTCTGTGTCTC
NONE
OsAffx.21424.1.S1_at--92--2971Chr01:22976547..22976571 (25 bp)
AATGGTTTCGCTCGTATTGGGAACA
LOC_Os01g40150
OsAffx.21424.1.S1_at--46--7631Chr01:22976565..22976589 (25 bp)
GGGAACATTGCCTCTATCCAGAATA
LOC_Os01g40150
OsAffx.21424.1.S1_at--44--7151Chr01:22976700..22976724 (25 bp)
GTCTTGGGCGTTTTCGACAGATCAC
LOC_Os01g40150
OsAffx.21424.1.S1_at--929--5571Chr01:22976749..22976940 (25 bp)
GAAATGTTTCGGGTGACCTCACGTT
LOC_Os01g40150
Target Sequence 
ATGATTTCAATATAGGGCCTGTCCACAGAAAAGATGTTATGAAAGCCAGTGTGATGCTTGAGAAGAAGAAAGAATATGCA
GCTATCTTTGCTTTTGATGTCAAAGTGATGCCTGATGCCCGTGAGATTGCCAATGAATCTGGTGTAAAAATCTTTGTGGC
AGATGTAATATATCACCTTTTCGACCAATTTACCACATACATTGAGGGTTTGAGGGAAATAGAGAAGGATGAAAAGATTG
TAGAGGCTGTGTTCCCTTGTGTTCTCAAGATCATTCCAGACTATGTGTTCAACTTGAAGGACCCAATTGTCTTAGGCGTT
GATGTCCTTGAAGGAGTAGCTAAGGTGGGAACTCCTCTGTGTCTCCCTTCCAATGGTTTCGCTCGTATTGGGAACATTGC
CTCTATCCAGAATAGCAGTAAGCAAGTTGATGTGGCAAGAAAAGGAGAGAAGGTTGCTATAAAGAATATAGTCTTGGGCG
TTTTCGACAGATCACAGGAAGCACTCCAGATGAGCAAAAGAAATGTTTCGGGTGACCTCACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis