Browse Element(s) Details


OsAffx.10033.1.S1_at

Description gb:NM_187869.1
DB_XREF= gi:34902821
TID=OsAffx.10033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g149106/11hypothetical protein
LOC_Os03g388102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10033.1.S1_at--800--971Chr01:8351319..8351340 (22 bp)
AGGAGCTCGTGCACGTCCAGGTGAA
LOC_Os01g14910
OsAffx.10033.1.S1_at--232--1591Chr01:8351322..8351570 (25 bp)
AGCTCGTGCACGTCCAGGTGAAGAA
LOC_Os01g14910
OsAffx.10033.1.S1_at--71--5091Chr01:8351329..8351577 (25 bp)
GCACGTCCAGGTGAAGAACGAAGTC
LOC_Os01g14910
OsAffx.10033.1.S1_at--743--5434Chr12:1761207..1761231 (25 bp)
GAACGAAGTCAAGCTAGCGAGGGCC
NONE
OsAffx.10033.1.S1_at--730--4114Chr12:1761210..1761234 (25 bp)
CGAAGTCAAGCTAGCGAGGGCCGAC
NONE
OsAffx.10033.1.S1_at--18--1071Chr01:8351771..8351795 (25 bp)
AGGGTGGCACGCCAGCATGGGACTA
LOC_Os01g14910
OsAffx.10033.1.S1_at--464--6492Chr01:8351828..8351852 (25 bp)
GATAGCGGAGATTGAAATCGAGACT
NONE
OsAffx.10033.1.S1_at--103--3051Chr01:8351843..8351867 (25 bp)
AATCGAGACTGGGAAATGCATGCAT
NONE
OsAffx.10033.1.S1_at--144--2291Chr01:8351856..8351880 (25 bp)
AAATGCATGCATGCGGGAACAGGCG
NONE
OsAffx.10033.1.S1_at--604--511Chr01:8351981..8352005 (25 bp)
ATCGAGCTTGATTTTAATCACCGGC
NONE
OsAffx.10033.1.S1_at--225--3631Chr01:8351987..8352011 (25 bp)
CTTGATTTTAATCACCGGCCGGCAC
NONE
Target Sequence 
AGGAGCTCGTGCACGTCCAGGTGAAGAACGAAGTCAAGCTAGCGAGGGCCGACGGCGGCGGAGAAGAGCTCGAGCTTGAG
GACGGCACGCTGGGGCGACGGAGCCGCGAGCTCGAGCTCAAGGACAGCGTGTGGATGCTGCTGCCTGCTGGTGCCTGGAG
GTCGACGTCGAGCGGGGGGAGACACGGCAGAGGTCAAGGCCGAGGGTGGCACGCCAGCATGGGACTATGGGAGAGTTCGA
GGTCAAGACGGGGCATGACGATAGCGGAGATTGAAATCGAGACTGGGAAATGCATGCATGCGGGAACAGGCGGAAGTCGA
GGTCGAGCCAGCGGACGACATCGGCGGAGATTGAAATCAAGCCAGGGAATGGCGTGCGAGTGTGGGCGGAAGTCGAGATC
AAGCCACCGGACATCGAGCTTGATTTTAATCACCGGCCGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis