Browse Element(s) Details


OsAffx.30743.1.S1_at

Description tigr:9629.m01470
TID=OsAffx.30743.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1490011/11Acyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein
LOC_Os01g14920Os.32339.1.S1_at11/111+8355819..8359072zinc knuckle family protein, putative, expressed
LOC_Os01g14926OsAffx.23251.1.S1_x_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14926Os.34371.1.S1_at11/111+8360918..8362513protein kinase family protein, putative, expressed
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30743.1.S1_at--378--3831Chr01:8347045..8347069 (25 bp)
CTGCTCGACCCGATCGTGGTGGCGG
LOC_Os01g14900
OsAffx.30743.1.S1_at--16--5831Chr01:8347089..8347113 (25 bp)
GACCGCGGTGACGTACAGCCTGAGC
LOC_Os01g14900
OsAffx.30743.1.S1_at--778--8851Chr01:8347127..8347151 (25 bp)
TGATCGCGCCGATCCGGACGGCGAG
LOC_Os01g14900
OsAffx.30743.1.S1_at--601--3971Chr01:8347238..8347262 (25 bp)
CGTGCCGGGAGGGTTACCTGCTCCG
LOC_Os01g14900
OsAffx.30743.1.S1_at--300--4311Chr01:8347376..8347400 (25 bp)
CCTTCTACTTCATGATGAACCCGAA
LOC_Os01g14900
OsAffx.30743.1.S1_at--1130--9871Chr01:8347381..8347405 (25 bp)
TACTTCATGATGAACCCGAAGCCGT
LOC_Os01g14900
OsAffx.30743.1.S1_at--226--4151Chr01:8347395..8347419 (25 bp)
CCCGAAGCCGTCGTACCGCGTCGAG
LOC_Os01g14900
OsAffx.30743.1.S1_at--927--2131Chr01:8347466..8347490 (25 bp)
ACAGCATCCGCGTCGCGAACCGGGT
LOC_Os01g14900
OsAffx.30743.1.S1_at--255--4071Chr01:8347521..8347545 (25 bp)
CGAGCTCACCGGGATGACCAGGAAG
LOC_Os01g14900
OsAffx.30743.1.S1_at--768--9671Chr01:8347526..8347550 (25 bp)
TCACCGGGATGACCAGGAAGGACAA
LOC_Os01g14900
OsAffx.30743.1.S1_at--392--4491Chr01:8347564..8347588 (25 bp)
GCCGGCAACGAAGGCGTCGTGGCCG
LOC_Os01g14900
Target Sequence 
CTGCTCGACCCGATCGTGGTGGCGGCGGCGCTGGGGAAGCCGGTGACCGCGGTGACGTACAGCCTGAGCCGGGTGTCGGA
GATGATCGCGCCGATCCGGACGGCGAGGCTGACGCGCGACCGGGAGGAGGATCGCCGGAGCATGGCGGCGCTGCTGGCGC
GCGGCGACCTGGTGGTGTGCCCCGAGGGGACGACGTGCCGGGAGGGTTACCTGCTCCGGTTCAGCCCGCTGTTCGCCGAG
CTCGGCGCCGACGTGAACCCCGTCGCGCTCGACGCCCGCGTCGACATGTTCCACGGCACGTCGACGACGCCGGCGGCCAA
GTGGATGGACCCCTTCTACTTCATGATGAACCCGAAGCCGTCGTACCGCGTCGAGTTCCTGCCCCGCGCGGCGCCGGCGC
CGGCGGCGGAGGACGGCGGCGACAGCATCCGCGTCGCGAACCGGGTGCAGCGACAGATCGGCGAGGCGCTCGGGTTCGAG
CTCACCGGGATGACCAGGAAGGACAAGTACATGATGCTCGCCGGCAACGAAGGCGTCGTGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis