Browse Element(s) Details


Os.9955.1.S1_a_at

Description gb:AK068737.1
DB_XREF= gi:32978756
TID=Os.9955.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158B10, full insert sequence.
FL= gb:AB059621.1 gb:AK068737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1486011/11Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os01g14870Os.5217.1.S1_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14870OsAffx.23250.2.S1_x_at11/111+8331321..8335376U1 zinc finger family protein, expressed
LOC_Os01g14880Os.57.1.S1_at5/111+8335984..8336226hypothetical protein
LOC_Os01g14890OsAffx.11057.2.S1_at11/111+8340563..8342544hypothetical protein
LOC_Os01g14890OsAffx.11057.1.S1_x_at10/111+8340563..8342544hypothetical protein
LOC_Os01g14890Os.2500.1.S1_at1/111+8340563..8342544hypothetical protein
LOC_Os01g14900OsAffx.30743.1.S1_x_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14900OsAffx.30743.1.S1_at11/111+8344695..8347629Acyltransferase family protein
LOC_Os01g14910OsAffx.10033.1.S1_at6/111+8351258..8351842hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009933biological_processmeristem organization
GO:0016310biological_processphosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9955.1.S1_a_at--78--6091Chr01:8330328..8330352 (25 bp)
GAGTATGAGACAGCTTCCGCACGAC
LOC_Os01g14860
Os.9955.1.S1_a_at--769--5591Chr01:8330360..8330384 (25 bp)
GAAATTTCCATGACAAGTGCCCATT
LOC_Os01g14860
Os.9955.1.S1_a_at--600--831Chr01:8330404..8330428 (25 bp)
ATGGATCGTCAGCATATGCGTGCAT
LOC_Os01g14860
Os.9955.1.S1_a_at--18--8811Chr01:8330504..8330528 (25 bp)
TGTTGCGATGGCGAAACTTTGACAT
LOC_Os01g14860
Os.9955.1.S1_a_at--900--2031Chr01:8330519..8330543 (25 bp)
ACTTTGACATGTAACCGGTGCACCC
LOC_Os01g14860
Os.9955.1.S1_a_at--132--2611Chr01:8330563..8330587 (25 bp)
AACCCTCACCCACCTGAGAATTGAG
LOC_Os01g14860
Os.9955.1.S1_a_at--577--5211Chr01:8330587..8330611 (25 bp)
GAATTCCCATAGCTGATGATCTGTA
LOC_Os01g14860
Os.9955.1.S1_a_at--903--7971Chr01:8330670..8330694 (25 bp)
GGATCCTCCTCGTCGATTTTCTTGG
LOC_Os01g14860
Os.9955.1.S1_a_at--617--6531Chr01:8330684..8330708 (25 bp)
GATTTTCTTGGTTCTTTGTGCCCTA
LOC_Os01g14860
Os.9955.1.S1_a_at--1025--10231Chr01:8330698..8330722 (25 bp)
TTTGTGCCCTAGACTGCTACCTGGT
LOC_Os01g14860
Os.9955.1.S1_a_at--961--3811Chr01:8330711..8330735 (25 bp)
CTGCTACCTGGTTTTTAGACTGTTC
LOC_Os01g14860
Target Sequence 
GAGTATGAGACAGCTTCCGCACGACCCCCCTGGAAATTTCCATGACAAGTGCCCATTTCCTCCCCCCTGGACGACGATGG
ATCGTCAGCATATGCGTGCATGATGGTTGGTGANGATGTGAAGTTACGTTGTTGTTGTNTGACCACCTNGNNNNNNANNN
NANNNNANNAGCAGTATGTTGCGATGGCGAAACTTTGACATGTAACCGGTGCACCCACACCATCCCTCCCCTACTAACCC
TCACCCACCTGAGAATTGAGAATTCCCATAGCTGATGATCTGTAATATGTTCTAGAGCAGTTTAAGAATGTATTTATTAT
GGTGTAGTTGATCCATATGTTGGGATCCTCCTCGTCGATTTTCTTGGTTCTTTGTGCCCTAGACTGCTACCTGGTTTTTA
GACTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9955.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis