Browse Element(s) Details


Os.9962.1.S1_s_at

Description gb:AK060341.1
DB_XREF= gi:32970359
TID=Os.9962.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-D05, full insert sequence.
FL= gb:AK060341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1485011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9962.1.S1_s_at--760--10111Chr01:8302772..8302796 (25 bp)
TATGTGCAGTTAGCTTGCACTGTGT
LOC_Os01g14850
Os.9962.1.S1_s_at--13--711Chr01:8302730..8302754 (25 bp)
ATGAGTAGTGTCTCTTCTATCTCTT
LOC_Os01g14850
Os.9962.1.S1_s_at--1030--3691Chr01:8302675..8302699 (25 bp)
CTATCTGTTTGTTGGTTGGTTGTGT
LOC_Os01g14850
Os.9962.1.S1_s_at--900--3871Chr01:8302671..8302695 (25 bp)
CTGTTTGTTGGTTGGTTGTGTTTGT
LOC_Os01g14850
Os.9962.1.S1_s_at--491--9731Chr01:8302640..8302664 (25 bp)
TAATTAGGTCCCTTCTTATATTTTG
LOC_Os01g14850
Os.9962.1.S1_s_at--908--9771Chr01:8302606..8302630 (25 bp)
TAAGTTCGTGATCATGTAGTAGTAC
LOC_Os01g14850
Os.9962.1.S1_s_at--886--6711Chr01:8302603..8302627 (25 bp)
GTTCGTGATCATGTAGTAGTACTAC
LOC_Os01g14850
Os.9962.1.S1_s_at--938--1171Chr01:8302586..8302610 (25 bp)
AGTACTACCACTGTTTCGAGCTCGA
LOC_Os01g14850
Os.9962.1.S1_s_at--1135--9891Chr01:8302584..8302608 (25 bp)
TACTACCACTGTTTCGAGCTCGAGG
LOC_Os01g14850
Os.9962.1.S1_s_at--521--3331Chr01:8302578..8302602 (25 bp)
CACTGTTTCGAGCTCGAGGCATGAA
LOC_Os01g14850
Os.9962.1.S1_s_at--258--5911Chr01:8302569..8302593 (25 bp)
GAGCTCGAGGCATGAATAATGCTAA
LOC_Os01g14850
Target Sequence 
TATGTGCAGTTAGCTTGCACTGTGTCTAGCTAGCGTTCTATTATGAGTAGTGTCTCTTCTATCTCTTTTCTTTACATGCA
TTTGGAGGAGGATTATTCTATCTGTTTGTTGGTTGGTTGTGTTTGTTTGTTTTAATTAGGTCCCTTCTTATATTTTGTGT
TTTAATTAAGTTCGTGATCATGTAGTAGTACTACCACTGTTTCGAGCTCGAGGCATGAATAATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9962.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis